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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGTACGAGATTTGGCCCTAGACCTGATAGACCCGTCATTGGCTATCGGTTTTTACTGCCGTGACAAAGgtgaactgttattgccagataaaatgttgggtcatcatttaagttcactccaatcttggttttcttatttactctgtctgtctgcttatgtag

Basic information

species Oryza sativa
transcript LOC_Os03g27350.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g27350.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G064212_T02 (Zea mays), 5'ss of exon 8
CACTGTACGAGATTTGGCCCTAGACCTGATAGACCCGTCATTGGCTATCGGTTTTTACTGCCGTGACAAAGgtgaactgttattgccagataaaatgttgggtcatcatttaagttcactccaatcttggttttcttatttactctgtctgtctgcttatgtag
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CGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGGTTTTTACTGTCGTGACAAAGgtgaaccgttgtagtttctcgga----tgcccattcggtcatgttttttcaagctctaatccctatgttttctatttgcatctttttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|112786279|gb|EE590445.1|EE590445
EST:     AGACCTGATAGACCCGTCATTGGCTATCGGTTTTTACTGCCGTGACAAAG                         ACGACTTTGATGATTTCTGTTCTCGGGCCTCTGAGCTAGTGGACAAAGCCA
genomic: AGACCTGATAGACCCGTCATTGGCTATCGGTTTTTACTGCCGTGACAAAGgtgaactgtt ... gcttatgtagACGACTTTGATGATTTCTGTTCTCGGGCCTCTGAGCTAGTGGACAAAGCCA