1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGGACTGTGGTATGTTTATGCTCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttggattcatttaagaaatttgagcagaatatcctctgcctctgggctagtgccttaacaatttggacttagcatgtgttgtagacttcattatgtaaatttctcgtgtgagtacataagcttgtttcacaatttctcgaggtgattttacataatcatgcttatcagtgtggtttgttttggaactgcag
species | Oryza sativa |
transcript | LOC_Os03g22400.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88478388|gb|CI415659.1|CI415659
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|89162394|gb|CI104722.1|CI104722
genomic: TTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88513377|gb|CI440883.1|CI440883
genomic: TTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88471999|gb|CI409270.1|CI409270
genomic: TTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|86833622|gb|CI337196.1|CI337196
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88281136|gb|CI402334.1|CI402334
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: AGGATTGAGCATTTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|86842207|gb|CI338528.1|CI338528
genomic: AGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACACCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|86432774|gb|CI086385.1|CI086385
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88263858|gb|CI367632.1|CI367632
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88254975|gb|CI353799.1|CI353799
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|29627374|gb|CB632385.1|CB632385
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88978221|gb|CI384697.1|CI384697
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: ACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88484068|gb|CI421339.1|CI421339
genomic: ACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: GAGCATTTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88514855|gb|CI442361.1|CI442361
genomic: GAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: GCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88903540|gb|CI089078.1|CI089078
genomic: GCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|87028902|gb|CI351205.1|CI351205
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|88503707|gb|CI431213.1|CI431213
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TGTCTTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTAEST: gi|58594246|gb|CF992554.1|CF992554
genomic: TGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
EST: TCAAGTACATTGATTTCCACAGCAGAGGACTGAGCATGTGGTTTAGTCAG GAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
genomic: TCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttgga ... ggaactgcagGAAAACATGGAATATTTCAGAAAGAGAACAGTGATGGAAATCTTAAGATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGACTGTGGTATGTTTATGCTCAAGTACATTGATTTCCACAGCAGAGGATTGAGCATGTCTTTTAGTCAGgtgagttggattcatttaagaaatttgagcagaatatcctctgcctctgggctagtgccttaacaatttggacttagcatgtgttgtagacttcattatgtaaatttctcgtgtgagtacataagcttgtttcacaatttctcgaggtgattttacataatcatgcttatcagtgtggtttgttttggaactgcag
- - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - GAGGAT