1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGAGACAGAGATAAAAACACCAAGAATCCCAGTTATCTCCAATGTGGATGCATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctctacacaatattctctaaatctgaatttataatgcagctctctctactctcttgggcacaatgtcttctgtatgcctgactaattagagttacag
species | Oryza sativa |
transcript | LOC_Os03g18590.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|29678025|gb|CB674300.1|CB674300
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|88974541|gb|CI022082.1|CI022082
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|86832740|gb|CI345154.1|CI345154
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|88226525|gb|CI226441.1|CI226441
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|86602591|gb|CI356955.1|CI356955
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: ATTTTGGCGCGACAG TTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|88689982|gb|CI734061.1|CI734061
genomic: ATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|88962243|gb|CI097396.1|CI097396
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|86259423|gb|CI008100.1|CI008100
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|88265238|gb|CI369012.1|CI369012
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|88280507|gb|CI401705.1|CI401705
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|86536861|gb|CI177067.1|CI177067
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|86487854|gb|CI130487.1|CI130487
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|88288219|gb|CI515363.1|CI515363
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|9865743|gb|AU101493.1|AU101493
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|89197296|gb|CI052026.1|CI052026
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|86827662|gb|CI272928.1|CI272928
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAAEST: gi|88843577|gb|CI372477.1|CI372477
genomic: CATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
EST: GATTTTGGCGCGACAG GTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
genomic: GATTTTGGCGCGACAGgtatgagctc ... agagttacagGTAACTTCCCCTGTGCAATGGGAGAGTACCGTGAAGACTCTGATGGGTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGACAGAGATAAAAACACCAAGAATCCCAGTTATCTCCAATGTGGATGCATCACCCCACTCAGATCCTGACACAATCAAGAAGATTTTGGCGCGACAGgtatgagctctacacaatattctctaaatctgaatttataatgcagctctctctactctcttgggcacaatgtcttctgtatgcctgactaattagagttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG