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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCAGACAGCGCAATTTTCCTTAAAGGAGGCACCTGTCAGAATAACGTTGTTCTCACGTAGATGCAACAGGCGTCTAGgttgtacttttttctcacctgtgatgtttcaattggaaagttgtagtatgagttactttatacaaacataatgatgcttttccaacttgtattgcatttacgtgcattcaacgcag

Basic information

species Oryza sativa
transcript LOC_Os03g18080.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G047894_T03 (Zea mays), 5'ss of exon 7
-------------------GTTTTCAGACAGCGCAATTTTCCTTAAAGGAGGCACCTGTCAGAATAACGTTGTTCTCACGTAGATGCAACAGGCGTCTAGgttgtacttttttctcacctgtgatgtttcaattggaaagttgtagtatga-gttactttatacaaacataatgatgcttttccaacttgtattgcatttacgtgcattcaacgcag
                   |||||||| |||| |||||| |||| |||||   ||| || || ||||| ||||||||| | ||||||||||||||| ||||||    || ||| ||   | |    |||   ||      || |  |   |  ||| | ||    |||| |||||| ||| |  || ||||| |||  | |  ||||          
AACTCCTATAGACCCATACGTTTTCAGTCAGCACAATTTACCTTGAAGGATAGACCAGTGAGGATAACATTGTTCTCAAGGAGATGCAACAGGCGTTTAGgtttcttttctttttctttttttcctttttccttttttccttttcttgaaacattagtata---gaacacaatgatacttct--aaattgtaatgcgctcat-tgcag---------

upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G047894_T02 (Zea mays), 5'ss of exon 8
GTTTTCAGACAGCGCAATTTTCCTTAAAGGAGGCACCTGTCAGAATAACGTTGTTCTCACGTAGATGCAACAGGCGTCTAGgttgtacttttttctcacctgtgatgtttcaattggaaagttgtagtatga-gttactttatacaaacataatgatgcttttccaacttgtattgcatttacgtgcattcaacgcag
|||||||| |||| |||||| |||| |||||   ||| || || ||||| ||||||||| | ||||||||||||||| ||||||    || ||| ||   | |    |||   ||      || |  |   |  ||| | ||    |||| |||||| ||| |  || ||||| |||  | |  ||||          
GTTTTCAGTCAGCACAATTTACCTTGAAGGATAGACCAGTGAGGATAACATTGTTCTCAAGGAGATGCAACAGGCGTTTAGgtttcttttctttttctttttttcctttttccttttttccttttcttgaaacattagtata---gaacacaatgatacttct--aaattgtaatgcgctcat-tgcag---------