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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATTATTTTTTGGACTGTTTTTTTTTTCAGGGAAACCAGCAATGAGCAAAGTGCGTGTTCTTGAGAGACTTAAAATCCATAATCATACATTGATCCAGgtaatatattactttcttttttgaaacatatgtagcactatccatgttggtcgattgcatatgccatgacaaaatattgcatttttctgtgtcatcatctgatatttgtttcgttgattgatgtag

Basic information

species Oryza sativa
transcript LOC_Os03g17920.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17920.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G065552_T01 (Zea mays), 5'ss of exon 3
TGCATTATTTTTTGGACTGTTTTTTTTTTCAGGGAAACCAGCAATGAGCAAAGTGCGTGTTCTTGAGAGACTTAAAATCCATAATCATACATTGATCCAGgtaatatat-tactttcttttttg------aaacatatgtagca----ctatccatgttggt---cgattgcatatgccatgacaaaatattgcattttt-ctgtgtcatcatctgatatttgtttcgttgattgatgtag------------------------------------
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--------------------------------GAAAGCCAGCAATGAGCAAAGTATGTGTTCTTGAGAGACTTGCACACCAAAATCACACACTGGTCCAGgtagagtgtgttgtttcttgactgtaaacaagatatatgttttagctcctgctcttacatgttcacaaatgtgaatagcatcatctgcttttgaattgcgattatgtatgctggcaagttttcttttgctgccttgggcattttaatatttgatgtttccttttctcattgatgtag