Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGCATTCTCTTAGTTCTTCGTGTTTGGGATGTGATCCTTTTTGAAGGAAATCGAACGATGTTGTTCCGGACAACGCTTGCTTTGCTCGACTTATATGgtataacttaatccctgaaaaagctattgtttcctattatttgttcttttctaataagcattgatgtgtaagtgtaatctacactgttgtctttgtatgttgatttgtag

Basic information

species Oryza sativa
transcript LOC_Os03g17540.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17540.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G095868_T02 (Zea mays), 5'ss of exon 10
TTTTGCATTCTCTTAGTTCTTCGTGTTTGGGATGTGATCCTTTTTGAAGGAAATCGAACGATGTTGTTCCGGACAACGCTTGCTTTGCTCGACTTATATGgtataacttaatccctgaaaaagctattgtttcc----------tattatttgttcttttctaataagcattgatgtgtaagtgtaatctacactgttgtctttgtatgttgatttgtag
                | || |||||||||||||| |||||||||||||||||||| |  ||||||||| |||| |||||||||||||| || ||||||||||| | |||  || |   |      || ||  |          | || |||  | | ||||  |    ||  || |  | ||| |||| ||| |||||||||  ||  || ||||| ||
----------------TACTCCGTGTTTGGGATGTCATCCTTTTTGAAGGAAATCGTAGAATGTTGTTCAGGACGACGCTTGCTTTGCTGGATTTATATGgtattagttatcccttcttagcctgtttattaacatctggaaaatgtttttttatttgttcttttttttatctattttgatgtgcaatcaacattgttgtcttcatacattaatttgcag

upper sequence: LOC_Os03g17540.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 10
TTTTGCATTCTCTTAGTTCTTCGTGTTTGGGATGTGATCCTTTTTGAAGGAAATCGAACGATGTTGTTCCGGACAACGCTTGCTTTGCTCGACTTATATGgtataacttaatccct-----------------------gaaaaagctattgtttcctattatttgttcttttctaataagcattgatgtgtaagtgtaatctacactgttgtctttgtatgttgatttgtag
                | |||||  |||||||||| |||||||||||||||||||| |  ||||||||| |||| || ||||||||||| || |||||||||||   ||| ||| |                       ||||| | ||  ||||  |  ||||||||||||| |  || | |||    |  | ||| ||   |||||||||||||  ||  || ||||| ||
----------------TACTTCGCATTTGGGATGTCATCCTTTTTGAAGGAAATCGCATAATGTTGTTCAGGACGACACTTGCTTTGCTGGATTTATATGgtattggttattccttcgtagtctgtttattaacatctggaaaatgttaaagtttttt--tatttgttctttttttttacgaatt----ttgatgtgcaactaacactgttgtcttcatacattaatttgcag