1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattattattgtgatacctgtcaaatgccttacaagctttttcatgtctagttaaagcaaataccttggcattgcacatgtttgcaaaatatgatcat...
species | Oryza sativa |
transcript | LOC_Os03g16700.4 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|29614153|gb|CB619166.1|CB619166
genomic: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTCCGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|38468421|gb|CF952552.1|CF952552
genomic: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|88470021|gb|CI407292.1|CI407292
genomic: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: CGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|29617377|gb|CB622389.1|CB622389
genomic: CGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAT GACAAATGGAAGACGCTCGTGCAEST: gi|86504415|gb|CI147048.1|CI147048
genomic: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCA
EST: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|33381803|gb|CF197146.1|CF197146
genomic: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|88488940|gb|CI426211.1|CI426211
genomic: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: TGATAATGCAAAGCACCGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|88488306|gb|CI425577.1|CI425577
genomic: TGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: CTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|88515625|gb|CI443279.1|CI443279
genomic: CTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGGEST: gi|29627496|gb|CB632507.1|CB632507
genomic: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
EST: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAG GACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
genomic: AACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattatta ... atgccaacagGACAAATGGAAGACGCTCGTGCACACGGCGAGCATCTCGCCCCAGCAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCGAGATGTCAAACTTCGGGCCTTTGATAATGCAAAGCACCGGACTTACGTTGATCTTAAGgtaattattattgtgatacctgtcaaatgccttacaagctttttcatgtctagttaaagcaaataccttggcattgcacatgtttgcaaaatatgatcat
- - - - - - - - - - - - - - - - - GCAAAG