1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGgtaatcattatactagaattatcttttttttagacatgtatactagaatcatcttgagcttgttttctttgtatgacagcaatagcaggctttatttcct...
species | Oryza sativa |
transcript | LOC_Os03g16570.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAG TTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAEST: gi|87009256|gb|CI276570.1|CI276570
genomic: AACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGgtaatcatta ... tgttttgcagTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCA
EST: AACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAG TTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCAEST: gi|88547695|gb|CI478011.1|CI478011
genomic: AACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGgtaatcatta ... tgttttgcagTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCA
EST: AACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAG TTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCA
genomic: AACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGgtaatcatta ... tgttttgcagTTTCATGCAAACTGCATCGATCCATGGTTGCGCCAACAGGGAACATGCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAACTGACAACACCCTGGAGGATGAGTTGACATGCAGTGTTTGCTTAGAACAAGTCGTTGTGGGTGATCTATTGAGAAGCCTACCATGCCTGCACCAGgtaatcattatactagaattatcttttttttagacatgtatactagaatcatcttgagcttgttttctttgtatgacagcaatagcaggctttatttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC