1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAGTTCATGATCCTCCCTACTGGTGCTTCATCTTTCAAGGAGGCTATGAAGATGGGTGTTGAAGTATACCATAACTTAAAGgtcactttcttgacatttctttaaggaactggattgttgtgcaaaaattaacactcaatatatctcatgttctacag
species | Oryza sativa |
transcript | LOC_Os03g14450.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTTCAAGGAGGCTATGAAGATGGGTGTTGAAGTATACCATAACTTAAAG TCTGTTATCAAGAAGAAGTATGGGCAAGATGCTACTAATGTTGGTGATGAAEST: gi|58600719|gb|CK011247.1|CK011247
genomic: CTTTCAAGGAGGCTATGAAGATGGGTGTTGAAGTATACCATAACTTAAAGgtcactttct ... tgttctacagTCTGTTATCAAGAAGAAGTATGGGCAAGATGCTACTAATGTTGGTGATGAA
EST: CTTTCAAGGAGGCTATGAAGATGGGTGTTGAAGTATACCATAACTTAAAG TCTGTTATCAAGAAGAAGTATGGGCAAGATGCTACTAATGTTGEST: gi|29678593|gb|CB674868.1|CB674868
genomic: CTTTCAAGGAGGCTATGAAGATGGGTGTTGAAGTATACCATAACTTAAAGgtcactttct ... tgttctacagTCTGTTATCAAGAAGAAGTATGGGCAAGATGCTACTAATGTTG
EST: CTTTCAAGGAGGCTATGAAGATGGGTGTTGAAGTATACCATAACTTAAAG TCTGTTATCAAGAAGAAGTATGGGCAAGATGCTACTAATGTTGGTGATGAA
genomic: CTTTCAAGGAGGCTATGAAGATGGGTGTTGAAGTATACCATAACTTAAAGgtcactttct ... tgttctacagTCTGTTATCAAGAAGAAGTATGGGCAAGATGCTACTAATGTTGGTGATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTCATGATCCTCCCTACTGGTGCTTCATCTTTCAAGGAGGCTATGAAGATGGGTGTTGAAGTATACCATAACTTAAAGgtcactttcttgacatttctttaaggaactggattgttgtgcaaaaattaacactcaatatatctcatgttctacag
- - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG