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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtag

Basic information

species Oryza sativa
transcript LOC_Os03g13970.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G165926_T02 (Zea mays), 5'ss of exon 8
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgt-atgactgactcttgctgttttcccccttcaaattgtag
|||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||||| | |||||  |||| |||||||| || ||| |||||  | |  ||| |||||||| |  || || |  | |   | |||| | || | |   |    |  ||||      | ||||  |||
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattattaaactaatgacatac--atgtacatttttagccgttgctttattaatttattggaccttttttatgtgtgaaataatag

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G070550_T01 (Zea mays), 5'ss of exon 2
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgc-gtatgactgactc-ttgctgttttcccccttcaaattgtag
|||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||| | | |||||  |||| |||||||| || ||| |||||  | |  ||| |||| |||     |      | |||||   ||| |  | | | | |  |||    |||      | ||||  |||
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACATAACGTTTGTGTCATCTATCCTTAATTCAgtatgtattattcttaaactaatggcatataggt------acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataatag

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G078663_T02 (Zea mays), 5'ss of exon 2
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgc-gtatgactgactc-ttgctgttttcccccttcaaattgtag
|||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||||| | |||||  |||| |||||||| || ||| |||||  | |  ||| |||| ||| |   |      | |||||   ||| |  | | | | |  |||    |||      | ||||   ||
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattcttaaactaatggcatacaggt------acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataacag

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G147671_T01 (Zea mays), 5'ss of exon 8
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtag
|||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||||| | |||||  |||| |||||||| || ||| |||||  | |  ||| |||| ||| |   |  ||   ||  | ||      || | | | |   ||  ||||      | ||||   ||
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattcttaaactaatggcatacaggtgcattt-tagctgcagcttcaataatttattg--gccctttttatgtgtaaaataacag

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G078663_T03 (Zea mays), 5'ss of exon 2
--CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgc-gtatgactgactc-ttgctgttttcccccttcaaattgtag
  |||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||||| | |||||  |||| |||||||| || ||| |||||  | |  ||| |||| ||| |   |      | |||||   ||| |  | | | | |  |||    |||      | ||||   ||
AGCTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattcttaaactaatggcatacaggt------acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88845879|gb|CI084609.1|CI084609
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86431099|gb|CI083522.1|CI083522
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86255506|gb|CI065183.1|CI065183
EST:     GTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: GTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|218485696|gb|FG969920.1|FG969920
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTTCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89187364|gb|CI047431.1|CI047431
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86435975|gb|CI107208.1|CI107208
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86428998|gb|CI075679.1|CI075679
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88831185|gb|CI081995.1|CI081995
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|33654151|gb|CF276765.1|CF276765
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88902442|gb|CI087980.1|CI087980
EST:     AAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: AAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88262630|gb|CI366404.1|CI366404
EST:     AGATCAGTTGTGACATCCATCCTTAACTCT                         CTCCCTGGTGGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATC
genomic: AGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGT-GTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATC
EST: gi|86538942|gb|CI179148.1|CI179148
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAGAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86478545|gb|CI121178.1|CI121178
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|94362977|gb|CI053138.1|CI053138
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88203319|gb|CI203168.1|CI203168
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTCACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88437840|gb|CI533797.1|CI533797
EST:     CATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: CATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86512255|gb|CI154888.1|CI154888
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88219664|gb|CI219224.1|CI219224
EST:     ATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: ATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88842826|gb|CI371726.1|CI371726
EST:     TTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGCCATCA
genomic: TTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86512727|gb|CI155360.1|CI155360
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88344598|gb|CI637207.1|CI637207
EST:     TGAGCAAGGTGTTTGAAGANAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGGTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88841547|gb|CI080803.1|CI080803
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86414186|gb|CI068589.1|CI068589
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88997551|gb|CI390217.1|CI390217
EST:     TGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|218483651|gb|FG955547.1|FG955547
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86259614|gb|CI065487.1|CI065487
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|29673812|gb|CB670087.1|CB670087
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89192813|gb|CI050111.1|CI050111
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCCATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|24468801|gb|CA305750.1|CA305750
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88273807|gb|CI394213.1|CI394213
EST:     GTTTGAAGACAGATCATGTGTGACATCCATCC-TAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: GTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86435819|gb|CI107052.1|CI107052
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|29686951|gb|CB683226.1|CB683226
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88960606|gb|CI006567.1|CI006567
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86255672|gb|CI066735.1|CI066735
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86492426|gb|CI135059.1|CI135059
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|29638893|gb|CB643902.1|CB643902
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86840416|gb|CI342593.1|CI342593
EST:     TGAGCAAGTTGTTTGAAGACAGATCAGTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89167578|gb|CI108979.1|CI108979
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCTATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89185635|gb|CI047504.1|CI047504
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCTATCCTTAACTCT                         CTCCCTGGTGTTGACCCCCATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88265231|gb|CI369005.1|CI369005
EST:     CATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: CATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA