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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtag

Basic information

species Oryza sativa
transcript LOC_Os03g13970.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G165926_T02 (Zea mays), 5'ss of exon 8
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgt-atgactgactcttgctgttttcccccttcaaattgtag
|||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||||| | |||||  |||| |||||||| || ||| |||||  | |  ||| |||||||| |  || || |  | |   | |||| | || | |   |    |  ||||      | ||||  |||
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattattaaactaatgacatac--atgtacatttttagccgttgctttattaatttattggaccttttttatgtgtgaaataatag

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G070550_T01 (Zea mays), 5'ss of exon 2
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgc-gtatgactgactc-ttgctgttttcccccttcaaattgtag
|||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||| | | |||||  |||| |||||||| || ||| |||||  | |  ||| |||| |||     |      | |||||   ||| |  | | | | |  |||    |||      | ||||  |||
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACATAACGTTTGTGTCATCTATCCTTAATTCAgtatgtattattcttaaactaatggcatataggt------acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataatag

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G078663_T02 (Zea mays), 5'ss of exon 2
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgc-gtatgactgactc-ttgctgttttcccccttcaaattgtag
|||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||||| | |||||  |||| |||||||| || ||| |||||  | |  ||| |||| ||| |   |      | |||||   ||| |  | | | | |  |||    |||      | ||||   ||
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattcttaaactaatggcatacaggt------acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataacag

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G147671_T01 (Zea mays), 5'ss of exon 8
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtag
|||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||||| | |||||  |||| |||||||| || ||| |||||  | |  ||| |||| ||| |   |  ||   ||  | ||      || | | | |   ||  ||||      | ||||   ||
CTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattcttaaactaatggcatacaggtgcattt-tagctgcagcttcaataatttattg--gccctttttatgtgtaaaataacag

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G078663_T03 (Zea mays), 5'ss of exon 2
--CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgc-gtatgactgactc-ttgctgttttcccccttcaaattgtag
  |||||||||||||||||||||| |||  |  ||| ||| |  |||||||||| |||||||||||||||||| | |||||  |||| |||||||| || ||| |||||  | |  ||| |||| ||| |   |      | |||||   ||| |  | | | | |  |||    |||      | ||||   ||
AGCTCTTCAAATGTCTGTCCAGGATGCAAACATGTCCAGTGACACTGATATGAGTAAGGTGTTTGAAGACAGAACGTTTGTGTCATCTATCCTTAATTCGgtatgtattattcttaaactaatggcatacaggt------acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218485696|gb|FG969920.1|FG969920
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTTCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|5055982|gb|AU075361.1|AU075361
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|218483651|gb|FG955547.1|FG955547
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|33657882|gb|CF280496.1|CF280496
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88471377|gb|CI408648.1|CI408648
EST:     TGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86491666|gb|CI134299.1|CI134299
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86834663|gb|CI340780.1|CI340780
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|33801681|gb|CF326712.1|CF326712
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88247152|gb|CI247001.1|CI247001
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88840672|gb|CI080126.1|CI080126
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88217668|gb|CI217517.1|CI217517
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88971753|gb|CI388991.1|CI388991
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|44670518|gb|CR283952.1|CR283952
EST:     TGAGCAATGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|58675750|gb|CK064437.1|CK064437
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|29678148|gb|CB674423.1|CB674423
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88411406|gb|CI518930.1|CI518930
EST:     GTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: GTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88840095|gb|CI079549.1|CI079549
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88841708|gb|CI080964.1|CI080964
EST:     TGAGCAAGGTGTTTGAAGGCAGATCATTTGTTACATCCATCCTTAACTCT                         CCCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86412758|gb|CI067163.1|CI067163
EST:     GTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: GTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86537394|gb|CI177600.1|CI177600
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89166075|gb|CI103165.1|CI103165
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         TTTCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88262482|gb|CI366256.1|CI366256
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACACCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88830946|gb|CI079380.1|CI079380
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86413292|gb|CI067697.1|CI067697
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88258169|gb|CI360755.1|CI360755
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88460344|gb|CI529419.1|CI529419
EST:     GGGCAAGGGGTTTGAAGACAGGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: GAGCAAGGTGTTTGAAGACA-GATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86428134|gb|CI073231.1|CI073231
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88903289|gb|CI088827.1|CI088827
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86486706|gb|CI129339.1|CI129339
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATC
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCT-CCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATC
EST: gi|86419054|gb|CI053855.1|CI053855
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88828527|gb|CI073397.1|CI073397
EST:     GTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: GTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88245959|gb|CI245808.1|CI245808
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGAATTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|6449564|gb|AU081506.1|AU081506
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88262261|gb|CI365837.1|CI365837
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTGAACTCT                         CTGCCCTTGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATC
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCT-CCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATC
EST: gi|33654617|gb|CF277231.1|CF277231
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 63 (downstream exon)
Score: 27

CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA