1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGCACAAATCATATAAAGGAAGCAGATCAACAAGCACCTGCAAAGCTAAAGTTGCAGCTATTTCCAATAAATGAAGCTACACGAAAGGCATTAGAGAAGgtaaatatgtctctttgttgctagcaaactgcaatatgaaattatgaatcacagtgctataggttaactattggctcaaacactcagatccctgtggttg...
species | Oryza sativa |
transcript | LOC_Os03g13790.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTTGCAGCTATTTCCAATAAATGAAGCTACACGAAAGGCATTAGAGAAG GATGAACATAATCCACATCTGGAACTCACATTAAGTGCTAGGNNNNNNNTAEST: gi|32948415|gb|BP184987.1|BP184987
genomic: AGTTGCAGCTATTTCCAATAAATGAAGCTACACGAAAGGCATTAGAGAAGgtaaatatgt ... tttttgacagGATGAACATAATCCACATCTGGAACTCACATTAAGTGCTAGGAAAAAAATA
EST: AGTTGCAGCTATTTCCAATAAATGAAGCTACACGAAAGGCATTAGAGAAG GATGAACATAATCCACATCTGGAACTCACATTAAGTGCTAGGNNNNNNNTAEST: gi|29618831|gb|CB623843.1|CB623843
genomic: AGTTGCAGCTATTTCCAATAAATGAAGCTACACGAAAGGCATTAGAGAAGgtaaatatgt ... tttttgacagGATGAACATAATCCACATCTGGAACTCACATTAAGTGCTAGGAAAAAAATA
EST: AGTTGCAGCTATTTCCAATAAATGAAGCTACACGAAAGGCATTAGAGAAG GATGAACATAATCCACATCTGGAACTCA
genomic: AGTTGCAGCTATTTCCAATAAATGAAGCTACACGAAAGGCATTAGAGAAGgtaaatatgt ... tttttgacagGATGAACATAATCCACATCTGGAACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCACAAATCATATAAAGGAAGCAGATCAACAAGCACCTGCAAAGCTAAAGTTGCAGCTATTTCCAATAAATGAAGCTACACGAAAGGCATTAGAGAAGgtaaatatgtctctttgttgctagcaaactgcaatatgaaattatgaatcacagtgctataggttaactattggctcaaacactcagatccctgtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC