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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTGAGGAACTTTATCAAGCTGGATTTATTAGTTATCCCAGGACAGAGACTGATAACTTCTCTCCAAACACTGACCTACATgtatgttttcaaatttactagttcctcttgtccattcttatttcatggtttgatgattcggattacatgttattgaatatttgcacctataactttcatt...

Basic information

species Oryza sativa
transcript LOC_Os03g06900.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G470438_T02 (Zea mays), 5'ss of exon 8
GTGGCTGAGGAACTTTATCAAGCTGGATTTATTAGTTATCCCAGGACAGAGACTGATAACTTCTCTCCAAACACTGACCTACATgtatgttttcaaatttactagttcctcttgtcc---attcttatttcatggttt---gatgattcggattacatgtta---ttgaatatttgcacctataactttcatt
|||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||  || ||  | |||||| |||   |||||     ||||||  ||  || |||   |||||||  | |||||  | |   ||   | ||| ||||||||         
GTGGCTGAAGAACTTTATCAAGCTGGATTCATTAGTTATCCGAGGACAGAAACTGATAACTTCTCCCCAAACACTGACCTGCATgttagtattggattttacttgtttgacttgtttcaaattctttctttttgttttcttgatgattttgcttacagttaacagtttcttgtttacacctata---------

upper sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 8
lower sequence: PP1S475_4V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGGCTGAGGAACTTTATCAAGCTGGATTTATTAGTTATCCCAGGACAGAGACTGATAACTTCTCTCCAAACACTGACCTACATgtatgttttcaaatttactagttcctcttgtccattcttatttcatggtttg---atgatt--cggattacatgttattgaatatttgcacctataactttcatt
||||| |||||| | |||||||| ||||| ||||||||||| || |||||||| ||||| || |||  |||    ||  | || |||   |  ||| |    |  ||     | |  ||  ||  || |  | |||   ||||||    |||  |||   |   |  ||  ||      | |||  |  
GTGGCAGAGGAATTATATCAAGCAGGATTCATTAGTTATCCTAGAACAGAGACAGATAAATTTTCTGAAAATCAAGATTTGCAGgtaccatggcaactcgggt--ttatagatatttatcattgcttgaatgcttgcatatgattactagatagcataccac-aatcataagctatcgcatcttcaa--