1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTACCTGATCGCATTTTCATGAAACTCATTGTGTGTGCTACAACAAACAAAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAGgtctgcattgttttatattcttactctccatttcagctttattcctgacatactgctgatgaatttactacattttgacag
species | Oryza sativa |
transcript | LOC_Os03g06740.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAG GGAGTTGCAATTGCTGTTAAAGCTGGGCTGACAAAGCAAGATTTTGATGCCEST: gi|33680417|gb|CF308656.1|CF308656
genomic: AAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAGgtctgcattg ... attttgacagGGAGTTGCAATTGCTGTTAAAGCTGGGCTGACAAAGCAAGATTTTGATGCC
EST: AAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAG GGAGTTGCAATTGCTGTTAAAGCTGGGCTGACAAAGCAAGATTTTGATGCCEST: gi|33680113|gb|CF308352.1|CF308352
genomic: AAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAGgtctgcattg ... attttgacagGGAGTTGCAATTGCTGTTAAAGCTGGGCTGACAAAGCAAGATTTTGATGCC
EST: AAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAG GGAGTTGCAATTGCTGTTAAAGCTGGGCTGACEST: gi|58586470|gb|CF984778.1|CF984778
genomic: AAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAGgtctgcattg ... attttgacagGGAGTTGCAATTGCTGTTAAAGCTGGGCTGAC
EST: AAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAG GGAGTTGCAATTGCTGTTAAAGCTGGGCTGACAAAGCAAGATTTTGATGCC
genomic: AAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAGgtctgcattg ... attttgacagGGAGTTGCAATTGCTGTTAAAGCTGGGCTGACAAAGCAAGATTTTGATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTACCTGATCGCATTTTCATGAAACTCATTGTGTGTGCTACAACAAACAAAGTTGTAGGAGTACACATGTGTGGTGAAGACGCACCTGAGATAATTCAGgtctgcattgttttatattcttactctccatttcagctttattcctgacatactgctgatgaatttactacattttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA