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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTGgtaaggcagaaaatcagttctactttctttgatattaacatctctctataataacatgtcactttacttgcttattgtccaccttttgtaatgacttcac...

Basic information

species Oryza sativa
transcript LOC_Os03g02756.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02756.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G453794_T01 (Zea mays), 5'ss of exon 7
CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTGgtaaggcagaaaatcagttctactttctttgatattaacatctctctataataacatgtca--ctttacttgcttattgtccaccttttgtaatgacttcac---
||||| ||   |||||||||||||||||||||||||||||  |||||||||||   | |  ||  ||| | |||  ||  | ||  || || | |   || || ||| |  || |||  |     |       |||| |   ||   | |   
CTAACCGTGCTGACCGTGTACATATTTCTCTATGGGAAAATGTATCTGgtaagatggta--tccattcaatttttctt--ttttcccacctttttg-gatgacttgtaaacctgtacccgtgaggttaatgttttttttctcgaacccgcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29615116|gb|CB620129.1|CB620129
EST:     CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG                         GCTTTGTCTGGAGTTGGAGAATCAATTCAGAATAGGGCGGATATATTGCAG
genomic: CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTGgtaaggcaga ... tgtttcgtagGCTTTGTCTGGAGTTGGAGAATCAATTCAGAATAGGGTGGATATATTGCAG
EST: gi|300216075|gb|HO088701.1|HO088701
EST:     CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG                         GCTTTGTCTGGAGTTGGAGAATCAATTCAGAATAGGGCGGATATATTGCAG
genomic: CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTGgtaaggcaga ... tgtttcgtagGCTTTGTCTGGAGTTGGAGAATCAATTCAGAATAGGGTGGATATATTGCAG
EST: gi|29613902|gb|CB618915.1|CB618915
EST:     CTAATTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG                         GCTTTGTCTGGAGTTGGAGAATCAATTCAGAATAGGGCGGATATATTGCAG
genomic: CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTGgtaaggcaga ... tgtttcgtagGCTTTGTCTGGAGTTGGAGAATCAATTCAGAATAGGGTGGATATATTGCAG