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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatatttgtagttttgcccatttacactatcagcaaaaacttctaatttacactgttatttatgattcag

Basic information

species Oryza sativa
transcript LOC_Os03g02170.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02170.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 10
GTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatatttgtagttttgc------ccatttac-actatcagcaaaaacttc-taatttacactgttatttatgattcag
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||       || | ||| ||| | ||  ||  | |  |||||     |||| ||||||   |||
GTACATCCTTCAATGGGAGTCCAAGCACATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatgttcagggttttgtactctgccttgtactactgttagtgaatgccttgtaattagtgttgttgtttatg---cag

upper sequence: LOC_Os03g02170.2 (Oryza sativa), 5'ss of exon 8
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
GTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatatt-tgtagttttgcccatttacactatcagcaaaaacttctaatttacactgttatt-tatgattcag----------------------------
|||||   | |||||||| ||  || |||| ||||||||||| || ||||| ||||||||||| || |||||||||| | | |||||||  ||| |     || |     |||  | |  |||   || ||  | || || |                               
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatc-tttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag

upper sequence: LOC_Os03g02170.2 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
GTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatatttgtagttttgcccatttacactatc-agcaaaaacttctaattta-cactgtt-atttatgat--tcag--------------------
|||    || ||||||||||||||| || | ||||| || || || ||||| || |||||||| |||||||||||| | | | |   |      |   ||| |  |  || || | ||  | |  ||   ||  ||| ||||  ||||                    
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag