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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaacaccactcacctttgttcattagcatgtcataatatacccccccaaaaaagaagagtatatcatcgttgtctcgtttcactgtcag

Basic information

species Oryza sativa
transcript LOC_Os03g01850.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G008327_T01 (Zea mays), 5'ss of exon 7
GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaacaccactcacctt-tgttcattagcatgtcataatatacccccccaaaaaagaagagtatatcatcgttgtctcgtttcactgtcag
|  || |||||  | ||||| | ||||||||||||||| |||||||||||||||||||||| ||      || |||  || ||||        | | ||| | ||| |    | || |  | || ||| |  | | ||  ||  ||| |||
GACCTGGCAACAGTAGTCCCAAATCTTGACCCTGCTGGGTTGGACCTTCTCTCTgtaagtcaaatggatttctcctgatgatcatggctgctgcttcatacatccctc----acagtattgaat-tcacc--tatttctgtttgctgacag

upper sequence: LOC_Os03g01850.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G143213_T02 (Zea mays), 5'ss of exon 8
GCTCTTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaacaccactcacctt-tgttcattagcatgtcataatatacccccccaaaaaagaagagtatatcatcgttgtctcgtttcactgtcag
|  || ||||| || ||||| | ||| || |||||||| |||||||||||||||||||||| ||      ||   |  || |||| | |    ||| |||||   || |     |    | |    || |  ||| ||  |   ||| |||
GACCTGGCAACAATAGTCCCAAATCTAGAACCTGCTGGCTTGGACCTTCTCTCTgtaagtcaaatggatttctgttgatgatcatgaccgctgcatcatatatatcctctctgtattgaatt----cacc--tgtttccgtctgctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33803869|gb|CF327809.1|CF327809
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88268788|gb|CI378723.1|CI378723
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|3766971|gb|AU031081.1|AU031081
EST:     TTGCAANTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|29662032|gb|CB658307.1|CB658307
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88446676|gb|CI526509.1|CI526509
EST:     GTCCCTACTCTTGACCCTGCTGG-TTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGGTAGACAGGCTCTT
genomic: GTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88559037|gb|CI489575.1|CI489575
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGNTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88253212|gb|CI351838.1|CI351838
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAAACAAAAAGGATCACAGCTAGACAGGCTC
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAA-CAAAA-GGATCACAGCTAGACAGGCTC
EST: gi|88978284|gb|CI384727.1|CI384727
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|86885548|gb|CI318699.1|CI318699
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCCGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|89196147|gb|CI397149.1|CI397149
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88437700|gb|CI531259.1|CI531259
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAAT-GCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCT
EST: gi|88488941|gb|CI426212.1|CI426212
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88509819|gb|CI437325.1|CI437325
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCANACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88437696|gb|CI531255.1|CI531255
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|38482398|gb|CF966438.1|CF966438
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|66915263|gb|CX102111.1|CX102111
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
EST: gi|88522726|gb|CI450366.1|CI450366
EST:     TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCT                         AAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT
genomic: TTGCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTgtaagtcgaa ... tcactgtcagAAAATGCTTCGGTACGAGCCAAACAAAAGGATCACAGCTAGACAGGCTCTT