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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGTGATTATGACACATTCGAGAGGACAAGGGAGGAGCACCTTAAGAACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAGgttggatctgtttctactttctagcaagtaccatagcctcaaaaattcgttgagagacctaactaagctcagaagaactgtttgtctagtctaagctaaa...

Basic information

species Oryza sativa
transcript LOC_Os02g58020.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58020.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G013890_T01 (Zea mays), 5'ss of exon 8
CAAAGGTGATTATGACACATTCGAGAGGACAAGGGAGGAGCACCTTAAGAACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAGgttggatctgtttctactttctagcaagtaccatagc----ctcaaaaattcgtt---gagagacctaactaagctcagaagaactgtttgtctagtctaagctaaa
||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||   |||||||||||||| | | ||||||     || || ||    |       || |||  |   ||    ||| | ||   ||   || |||| |   | || || |   |||     
CAAAGGTGACTATGACACATTTGAGAGGACAAGGGAAGAGCACCTTAAGAATCAGCAGAAAGCCTTTGAAACAAATGAGAAGGCCAGACAGCACATGCAGgttggttgtatttctatcaagtaccatgtgttctgagagtgcttaaatgtctcttttcaagaaaacttcatagtttctgaagcaaaatctgacttgg--aag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29662747|gb|CB659022.1|CB659022
EST:     ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAG                         GCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
genomic: ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAGgttggatctg ... ttctgtgtagGCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
EST: gi|58588466|gb|CF986774.1|CF986774
EST:     ACCAGCAGAAAGC-TTTGAGGCAAATGAGAAGG-CAGATCCCACATGCAG                         GCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
genomic: ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAGgttggatctg ... ttctgtgtagGCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
EST: gi|24468674|gb|CA305623.1|CA305623
EST:     ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAG                         GCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTTGTTCA
genomic: ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAGgttggatctg ... ttctgtgtagGCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTT-GTTCA
EST: gi|218483226|gb|FG956166.1|FG956166
EST:     ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAG                         GCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
genomic: ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAGgttggatctg ... ttctgtgtagGCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
EST: gi|86909957|gb|CI292894.1|CI292894
EST:     ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAG                         GCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
genomic: ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAGgttggatctg ... ttctgtgtagGCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
EST: gi|58602069|gb|CK012597.1|CK012597
EST:     ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAG                         GCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA
genomic: ACCAGCAGAAAGCTTTTGAAACAAATGAGAAGGCCAGATCCCACATGCAGgttggatctg ... ttctgtgtagGCATTCATTGACAAGTTCCGTTACAATGCAAAGAGAGCATCACTTGTTCAA