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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGCTGATGTATGAGACAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaacttaaataatatcttgtgttggtcaaggcaacctgagtattggattgtctcgtcttttaacagttatgcttcgggttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g57180.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57180.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G143651_T01 (Zea mays), 5'ss of exon 10
GCTGAGCTGATGTATGAGACAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaacttaaataatatcttg-----tgttggtcaaggcaacctgagtattggattgtctcgtcttttaac--agttatgcttcgggttgtgcag
|||||||||||||| |||||||| || ||||||||| | ||  || |||| ||||||||| ||||||||||||||| |||| ||  |          |  ||| ||  | || | | | ||  | | | |||   |  | ||  |  | ||  || |         
GCTGAGCTGATGTACGAGACAATCCGCGAATGGCCAAGATATGTCAATGTCCCTCTTCCTGTTGCAAGGgtatgaatttaattaccaggccagtacatactggcca--gaaaacggggcatcaggtagactctcgtactgacttatgtgtgtctcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11442907|gb|BF430806.1|BF430806
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|4714677|gb|AU055794.1|AU055794
EST:     ATTACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCCTATTGCAAGG                         NCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCCGTT
genomic: A-TACGTGAATGGCCACGGTACATCGATGTTCCTCTT-CCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTT-CCGTT
EST: gi|86422921|gb|CI060494.1|CI060494
EST:     CGATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|88246401|gb|CI246250.1|CI246250
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86496928|gb|CI139561.1|CI139561
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|29673109|gb|CB669384.1|CB669384
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|88227607|gb|CI227087.1|CI227087
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86423690|gb|CI062451.1|CI062451
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|88222421|gb|CI222377.1|CI222377
EST:     GTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: GTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|88985739|gb|CI033068.1|CI033068
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86831290|gb|CI297559.1|CI297559
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86599963|gb|CI258303.1|CI258303
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86435376|gb|CI106609.1|CI106609
EST:     CAATACGTGAATGGCCCCGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACCAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|11564837|gb|AU165473.1|AU165473
EST:     TCTTCCTTATTGCAA-G                         GNTATCGCATCTCCAAGGGAATTGNTGCTAAACAAAGTGCCNTTTCCGTTG
genomic: TCTTCC-TATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|88834503|gb|CI077786.1|CI077786
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|29671359|gb|CB667634.1|CB667634
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86435209|gb|CI106442.1|CI106442
EST:     CTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86837459|gb|CI345692.1|CI345692
EST:     TCTTCCTATTGC-A-G                         GCTATCGCATCTCCAA-GGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: TCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86508531|gb|CI151164.1|CI151164
EST:     TGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: TGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|86895469|gb|CI331314.1|CI331314
EST:     ACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: ACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|8856604|gb|AU093922.1|AU093922
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         G-TATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
EST: gi|88730417|gb|CI754030.1|CI754030
EST:     CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGG                         GCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG
genomic: CAATACGTGAATGGCCACGGTACATCGATGTTCCTCTTCCTATTGCAAGGgtatgaactt ... ggttgtgcagGCTATCGCATCTCCAAGGGAAATGCTGCTAAACAAAGTGCCCTTTCCGTTG