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TCCCACAGATTTGCTTTCCTTATCTAAAGGAATTTCATCAGAAATTGCTGAATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTGgtatttatgttcgtcacaagttatttctaaattatctgcttcatttgtaaaaagatgagcaccataaataaattaatccacaacaatcagtgctcccggg...
species | Oryza sativa |
transcript | LOC_Os02g56200.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTG GTCAACAAAGGTGTCGAAGCATCATTAGTGCAGCTCCTCGAGEST: gi|3768340|gb|AU032367.1|AU032367
genomic: AATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTGgtatttatgt ... tgatgataagGTCAACAAAGGTGTCGAAGCATCATTAGTGCAGCTCCTCGAG
EST: AATCGTCAGAGAAGCAGAAGATCGA-GCAACAGCCCGTTTTCTTGACCTG GTCAACAAAGGTGTCGAAGCATCAT-AGTGCEST: gi|84117294|gb|CD151061.1|CD151061
genomic: AATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTGgtatttatgt ... tgatgataagGTCAACAAAGGTGTCGAAGCATCATTAGTGC
EST: AATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTG GTCAACAAAGGTGTCGAAGCATCATTAGTGCEST: gi|88327786|gb|CI657830.1|CI657830
genomic: AATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTGgtatttatgt ... tgatgataagGTCAACAAAGGTGTCGAAGCATCATTAGTGC
EST: AATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTG GTCAACAAAGGTGTCGAAGCATCATTAGTGCAGCTCCTCGAGACTGGTTTG
genomic: AATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTGgtatttatgt ... tgatgataagGTCAACAAAGGTGTCGAAGCATCATTAGTGCAGCTCCTCGAGACTGGTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCACAGATTTGCTTTCCTTATCTAAAGGAATTTCATCAGAAATTGCTGAATCGTCAGAGAAGCAGAAGATCGAAGCAACAGCCCGTCTTCTTGACCTGgtatttatgttcgtcacaagttatttctaaattatctgcttcatttgtaaaaagatgagcaccataaataaattaatccacaacaatcagtgctcccggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA