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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGgtatgcatgataagctattctgaacccacaatcaggagcaatatgaatcttatttttttctaacgtactgaaacaatttccctaacaacattcttggcattttacag

Basic information

species Oryza sativa
transcript LOC_Os02g51410.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g51410.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G070218_T02 (Zea mays), 5'ss of exon 9
AGATTGCATCTAAACAGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGgtatgcatgataagctattctgaacccacaatcaggagcaatatga-atcttatttttttctaacgtactgaaacaatttccctaacaacattcttggcattttacag
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AGATTGCATGTAAACAAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGgta------aaagcttacttcgaatatcgtttctggttctacatatcatcagacagctctttaa------aagataacattcttaac----ctcttcgcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86875580|gb|CI323934.1|CI323934
EST:     AGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAG                         TCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCG
genomic: AGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGgtatgcatga ... cattttacagTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCG
EST: gi|88662165|gb|CI465740.1|CI465740
EST:     AGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAG                         TCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCG
genomic: AGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGgtatgcatga ... cattttacagTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCG
EST: gi|18388493|gb|BM421691.1|BM421691
EST:     AGCTAACACCAACTGACATTGCTATTGAG                         TCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCG
genomic: AGCTAACACCAACTGACATTGCTATTGAGgtatgcatga ... cattttacagTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCG
EST: gi|88994897|gb|CI036478.1|CI036478
EST:     AGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAG                         TCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCG
genomic: AGGGTCATGATGATGTATCGAAGCTAACACCAACTGACATTGCTATTGAGgtatgcatga ... cattttacagTCGTTTCATAAGATCGAGAACTTTGTCATTGAACATACCGTTGACAATCCG