1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGAGATGCAGCAACTTCGTGATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAGgtgagaaagctggcattcatcttaagctaaacttttatggaagcaagttacttaattgtgcactgtttcaaaatccttctactcag
species | Oryza sativa |
transcript | LOC_Os02g50320.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAG GAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCAEST: gi|58686598|gb|CK075285.1|CK075285
genomic: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAGgtgagaaagc ... ttctactcagGAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCA
EST: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAG GAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCAEST: gi|58661349|gb|CK050029.1|CK050029
genomic: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAGgtgagaaagc ... ttctactcagGAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCA
EST: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAG GAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCAEST: gi|58681726|gb|CK070413.1|CK070413
genomic: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAGgtgagaaagc ... ttctactcagGAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCA
EST: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAG GAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCAEST: gi|66918993|gb|CX105841.1|CX105841
genomic: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAGgtgagaaagc ... ttctactcagGAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCA
EST: GCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAG GAAAAGT-CCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCAEST: gi|86495989|gb|CI138622.1|CI138622
genomic: GCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAGgtgagaaagc ... ttctactcagGAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCA
EST: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAG GAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCA
genomic: ATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAGgtgagaaagc ... ttctactcagGAAAAGTACCAGCTGCGCCTAAAAGTTCTAGAAGATGGATTGAGGGGGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAGATGCAGCAACTTCGTGATAAACTTGCTATTGCAGAACGAACAGCTCGATCTGAAGCTCAACTAAAGgtgagaaagctggcattcatcttaagctaaacttttatggaagcaagttacttaattgtgcactgtttcaaaatccttctactcag
- - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA