Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatgagcttcatcttagcacttgcaaaattttacctcgattcgcaattctagatgcatcgtgagatggtcggttttgtcaaacattggaataatccttccctgattttccatatag

Basic information

species Oryza sativa
transcript LOC_Os02g49800.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86527619|gb|CI167825.1|CI167825
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29658893|gb|CB655168.1|CB655168
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88216608|gb|CI214708.1|CI214708
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88336317|gb|CI648904.1|CI648904
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29642626|gb|CB647633.1|CB647633
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|58691661|gb|CK080348.1|CK080348
EST:     ATTCCTCAATGGAAAGGACATTGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89173768|gb|CI041661.1|CI041661
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88955888|gb|CI092176.1|CI092176
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29645619|gb|CB650626.1|CB650626
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88443398|gb|CI552141.1|CI552141
EST:     CAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: CAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86537626|gb|CI177832.1|CI177832
EST:     CAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: CAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|94362337|gb|CI052317.1|CI052317
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|15008459|gb|AU222847.1|AU222847
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCANCAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAAGTTGGTTGTGTATGNCAATCAACAGAGGCAG
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGC-AAGTTGGTTGTGTATGACAATCAACAGAGGCAG
EST: gi|29633919|gb|CB638928.1|CB638928
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29675851|gb|CB672126.1|CB672126
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88464263|gb|CI532198.1|CI532198
EST:     AACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: AACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88440021|gb|CI543938.1|CI543938
EST:     ATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88269671|gb|CI380969.1|CI380969
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29618914|gb|CB623926.1|CB623926
EST:     ATTCCTCAATGGAAAGGACATTGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86858875|gb|CI275099.1|CI275099
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88366327|gb|CI553725.1|CI553725
EST:     GACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: GACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88366996|gb|CI553886.1|CI553886
EST:     CATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: CATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89167239|gb|CI104525.1|CI104525
EST:     CAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: CAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89186040|gb|CI047909.1|CI047909
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89173276|gb|CI041169.1|CI041169
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89185153|gb|CI050887.1|CI050887
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86504446|gb|CI147079.1|CI147079
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACCAGAGGCAG
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAAC-AGAGGCAG
EST: gi|88491012|gb|CI428284.1|CI428284
EST:     GACATCGATCATGGGTCAGCAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAANTTGGTTGTGTATGACAATCGACAGAGGCAGA
genomic: GACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89195473|gb|CI051586.1|CI051586
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|13805771|gb|AU181198.1|AU181198
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCANCAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGNCAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|27576286|gb|CA998980.1|CA998980
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86859086|gb|CI277012.1|CI277012
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88271379|gb|CI387432.1|CI387432
EST:     ATTCCTCAAT-GAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGGTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|87015957|gb|CI279709.1|CI279709
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29631316|gb|CB636325.1|CB636325
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88261952|gb|CI365528.1|CI365528
EST:     ATTCCTCAATGGAAAGGACATCGATCAT-GGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAATG-TGGTTTTGTATGACAATCAACAGAGGCAG
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAA-GTTGGTTGTGTATGACAATCAACAGAGGCAG
EST: gi|89192890|gb|CI050188.1|CI050188
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACCATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88455998|gb|CI526814.1|CI526814
EST:     TCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: TCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88461379|gb|CI526887.1|CI526887
EST:     ATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88484789|gb|CI422060.1|CI422060
EST:     TCAACAGTAATANTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: TCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88420286|gb|CI559532.1|CI559532
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAGTGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88958575|gb|CI096091.1|CI096091
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88262784|gb|CI366558.1|CI366558
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGCTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88514899|gb|CI442553.1|CI442553
EST:     AATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: AATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86543975|gb|CI184181.1|CI184181
EST:     TTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGTCAGA
genomic: TTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29669338|gb|CB665613.1|CB665613
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|27577711|gb|CB000406.1|CB000406
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88964604|gb|CI069952.1|CI069952
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89175446|gb|CI042467.1|CI042467
EST:     AAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: AAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88218144|gb|CI217993.1|CI217993
EST:     TTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGTCAGA
genomic: TTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86825473|gb|CI360093.1|CI360093
EST:     TTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: TTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86430051|gb|CI082474.1|CI082474
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGTTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88470954|gb|CI408225.1|CI408225
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|5003015|gb|AU068124.1|AU068124
EST:     CAGTAATAGTCGGAG                         ATAAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAG
genomic: CAGTAATAGTCGGAGgtatagatga ... ttccatatagAT-AATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAG
EST: gi|88848570|gb|CI087092.1|CI087092
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|313081067|gb|HO213653.1|HO213653
EST:     ATTCCTCAATGGAAAGGACATTGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86535116|gb|CI175322.1|CI175322
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86434961|gb|CI106194.1|CI106194
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86485391|gb|CI128024.1|CI128024
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCACCAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACCATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89189608|gb|CI049147.1|CI049147
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88512611|gb|CI440117.1|CI440117
EST:     CAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: CAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88962063|gb|CI097216.1|CI097216
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29664922|gb|CB661197.1|CB661197
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86843677|gb|CI339681.1|CI339681
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29664382|gb|CB660657.1|CB660657
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|9864998|gb|AU100748.1|AU100748
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88572028|gb|CI663599.1|CI663599
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88535381|gb|CI464178.1|CI464178
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89180240|gb|CI044519.1|CI044519
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|89176218|gb|CI043239.1|CI043239
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86833710|gb|CI337284.1|CI337284
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAATTTGGTTGGGTATGACAATCAACAGAGCCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88955592|gb|CI091881.1|CI091881
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88478329|gb|CI415600.1|CI415600
EST:     GACATCCATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTNTATNACAATCAACAGAGGCAGA
genomic: GACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88311161|gb|CI658074.1|CI658074
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86491253|gb|CI133886.1|CI133886
EST:     AAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: AAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88458932|gb|CI555613.1|CI555613
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88505871|gb|CI433377.1|CI433377
EST:     GACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAANTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: GACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86883282|gb|CI337943.1|CI337943
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88264789|gb|CI368563.1|CI368563
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88257902|gb|CI360488.1|CI360488
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|109712466|gb|CI105074.1|CI105074
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88444276|gb|CI554993.1|CI554993
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAGTGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|86836629|gb|CI347281.1|CI347281
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88990691|gb|CI108078.1|CI108078
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|29644454|gb|CB649461.1|CB649461
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88283832|gb|CI405278.1|CI405278
EST:     CATCGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTCTGCNCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: CATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|25806578|gb|CA762539.1|CA762539
EST:     ATTCCTCAATGGAAAGGACATTGATCATGGGTCAACAGTAATAGTCGGAG                         ATAATGCTTTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
EST: gi|88843393|gb|CI372293.1|CI372293
EST:     ATTCCTCAATGGAAA-GACATCGATCATGGGTCAACACTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGGTTGGTTGTGTATGACAATCAACAGAGGCAG
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAA-GTTGGTTGTGTATGACAATCAACAGAGGCAG
EST: gi|88978617|gb|CI384958.1|CI384958
EST:     ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACACTAATAGTCGGAG                         ATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA
genomic: ATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 74 (downstream exon)
Score: 116

GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAGgtatagatga ... ttccatatagATAATGCTCTGCGCGGCAAGTTGGTTGTGTATGACAATCAACAGAGGCAGATTGGATGGACTAATTCAGACTGCACCAAGCCACAAACACAAAAGGGCTT




<











<


<