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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACAgttaagacttcctttcctttctgttggttatatagcattggctgataatgacttggatttagctacggaatatgtcattacaaaattttataggaaaatc...

Basic information

species Oryza sativa
transcript LOC_Os02g48370.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g48370.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G421899_T03 (Zea mays), 5'ss of exon 7
GAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACAgttaagacttcctttcctttctgttggttatatagcattggctga-taatgacttggatttagctacggaatatgtcattacaaaattttataggaaaatc--
| || |||||||| |||||||||||||||||||||| |||| |||||  |||  |  |||||||||| || ||  ||||||| || ||| | | | |  |||  |||||     |   | | || |||  || | |  | ||    ||     | |||||||| || ||| |   |   
GGGTGCTCAAGAGAAAGAAAGCATCTAGTCCAGAGTATGCTCTCAAGTCGTCCTGCTCAAAAATAAATAAGTCTGAgttaaggctccctgtacatacatttgtctatatctatatatttaagtattgatatgcaatatgtta---gatgaagaaatacaaaatcttgtagcaccttgta

upper sequence: LOC_Os02g48370.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G110109_T01 (Zea mays), 5'ss of exon 8
GAGTACTCAAGAGGAAGAAAGCATCTAGTCCAGAGTGTGCTATCAAGGTGTCTCGTACAAAAATAAACAAATCACAgttaagacttcctttcctttctgttggttatatagcattggctgataatgacttggatttagc-tacggaatatgtcattacaaaattttataggaaaatc-
| || |||||||| |||||||||||||||||||||| |||| |||||  ||| ||  |||||| ||| || ||||||||||| || ||| | | |||  |||| |||||     |   |  |||  |   | ||  |   |     ||     | | | |||| || |||     |  
GGGTGCTCAAGAGAAAGAAAGCATCTAGTCCAGAGTATGCTCTCAAGTCGTCCCGCTCAAAAACAAATAAGTCACAgttaaggctccctgtacattcatttggctatatctatataatt--taagtatcggtatgcaatatgttagatgaagaaatcctaaatcttgtagcgtcttgt