1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGATCTTCTCAAAGAAATACCATTCCTAAAGCCATTTCCCAGCCACTCTAACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactgcttgttagtactccctccatttctttttgtttgaagttggttagtttgaaattgaactaaccaacatcatacgtttacagaggtagtata...
species | Oryza sativa |
transcript | LOC_Os02g47940.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTTTATTCTCTGCGAGGTCACATCA-GCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|88516054|gb|CI443708.1|CI443708
genomic: C-TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: AAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|87031063|gb|CI362277.1|CI362277
genomic: AAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: ACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCCCCACTATGACAAGAAGGAAEST: gi|86413376|gb|CI067781.1|CI067781
genomic: ACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|88263627|gb|CI367401.1|CI367401
genomic: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: CAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|88275380|gb|CI395231.1|CI395231
genomic: CAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: TCACATCAGGCAAAAATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATAATCCGCCACTATGACAAGAAGGAAEST: gi|87029149|gb|CI276417.1|CI276417
genomic: TCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|88835289|gb|CI370592.1|CI370592
genomic: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: CACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|88832337|gb|CI019278.1|CI019278
genomic: CACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|88265765|gb|CI376667.1|CI376667
genomic: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: CAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|86491581|gb|CI134214.1|CI134214
genomic: CAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|86492376|gb|CI135009.1|CI135009
genomic: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|29641903|gb|CB646910.1|CB646910
genomic: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGCCCTTGCGAAGATGGGAGTAATGATCCGCCCCTATGCCAAGAAGGAAEST: gi|88848394|gb|CI086916.1|CI086916
genomic: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: CATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|89192587|gb|CI049885.1|CI049885
genomic: CATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAAEST: gi|88511333|gb|CI438839.1|CI438839
genomic: ACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: TGCAAAGGAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCNCCACTATGACAAGAAGGAAEST: gi|88257197|gb|CI359585.1|CI359585
genomic: TGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
EST: GATGCAAAGAAAATAAAG GAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
genomic: GATGCAAAGAAAATAAAGgtttgcactg ... caattttcagGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATCTTCTCAAAGAAATACCATTCCTAAAGCCATTTCCCAGCCACTCTAACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGgtttgcactgcttgttagtactccctccatttctttttgtttgaagttggttagtttgaaattgaactaaccaacatcatacgtttacagaggtagtata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc