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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttctacaattctgttgccccagatggcgtacttaaaatctttagattattttattatatttgtttctttctacatctgcag

Basic information

species Oryza sativa
transcript LOC_Os02g47220.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47225.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 13
GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttctacaattctg---ttgccccagatggcgtacttaa-aatctttagattattttattatatttgtttctttctacatctgcag
 |||  |||| ||||||||| ||||| |||||| ||| |||||| || ||| | ||||| || |||||||||||| || || |    ||  |  ||||||  ||   |   ||| ||   | | || || || |   |||||   |     |||||
ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttcttcagttatagtattatcttagatggtatatcaattgatcattgcgtaacttgataatttaaatttctgcatgt-cttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58595654|gb|CK006182.1|CK006182
EST:     TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA                         TCACTGTGCTCATGGGACCCTTTCAAGAGACCAAAGGCTGCAGAAGTTCTC
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
EST: gi|58683626|gb|CK072313.1|CK072313
EST:     TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA                         TCACTGTGCTCATGGGACCCTTTCAAGAGACCAAAGGCTGCAGAAGTTCTC
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
EST: gi|88256807|gb|CI354588.1|CI354588
EST:     TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA                         TCACTGTGCTCATGGGACCCTTGCAAGAGAC
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGAC
EST: gi|88664333|gb|CI687436.1|CI687436
EST:     TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA                         TCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
EST: gi|58675617|gb|CK064304.1|CK064304
EST:     TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA                         TCACTGTGCTCATGGGACCCTTTCAAGAGACCAAAGGCTGCAGAAGTTCTC
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
EST: gi|163918501|gb|EG711431.1|EG711431
EST:     TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA                         TCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC