1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTGATGATGTCACATTCCACCAGTGTGTCAACTTGACAAGATTTAACTCAGAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAAgtaatattatgatccctccttatgcttgtattagttttcccctgtagtgacatttttattctttacttggcttttgaccacaaaattctgttgtag
species | Oryza sativa |
transcript | LOC_Os02g46510.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAA ATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGATEST: gi|218490303|gb|FG960446.1|FG960446
genomic: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAAgtaatattat ... tctgttgtagATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGAT
EST: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATCGATGAA ATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGATEST: gi|58672424|gb|CK061110.1|CK061110
genomic: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAAgtaatattat ... tctgttgtagATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGAT
EST: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAA ATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGATEST: gi|218499528|gb|FG946431.1|FG946431
genomic: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAAgtaatattat ... tctgttgtagATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGAT
EST: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAA ATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGATEST: gi|33811253|gb|CF331516.1|CF331516
genomic: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAAgtaatattat ... tctgttgtagATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGAT
EST: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAA ATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGTTTCTACCAACGATEST: gi|58684077|gb|CK072764.1|CK072764
genomic: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAAgtaatattat ... tctgttgtagATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGAT
EST: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAA ATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGAT
genomic: GAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAAgtaatattat ... tctgttgtagATATCGAATCACTGAGGGTGTAAATCTCCCATTCCGGGTTCTACCAACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGATGTCACATTCCACCAGTGTGTCAACTTGACAAGATTTAACTCAGAAAAGACAGTCAGCTTTGTGCCGCCAGACGGTGAATTTGAATTGATGAAgtaatattatgatccctccttatgcttgtattagttttcccctgtagtgacatttttattctttacttggcttttgaccacaaaattctgttgtag
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