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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggtgcttctgtttctatttccggaacatccttactgagttactgactgattcgggggttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g42320.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G824831_T03 (Zea mays), 5'ss of exon 10
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggtgc-ttctgttt--ctatttccggaacatccttactgagttactgactgattcgggggttgcag-------
|||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||  || | |      || |  ||   || ||  | || ||||| | | ||||| | | || ||| ||   |           
ATACACAGAAGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcgcatccctgttgtacttgcttagtttagaaatatcctaaat-agttaataattggttccggatcttggacttgcag

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G382240_T01 (Zea mays), 5'ss of exon 11
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggtgcttct-gtttctatttccggaacatccttactgagttactgactgattcgg-------gggttgcag
||||||||| || ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||  |    |    ||| | ||| ||   |    |||||||| | | ||||||| | || ||| |       |  ||||||
ATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgc---aacccacttgtagttgcttagtttaaaacatcctaaat-agttactaattggttctgcatcttggacttgcag

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggtgcttct-gtttctatttccggaacatccttactgagttactgactgattcgg-------gggttgcag---------------------
||||||||| || ||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||  |    |    ||| | ||| ||   |    |||||||| | | ||||||| | || ||| |       |  ||||||                     
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgc---aacccacttgtagttgcttagtttaaaacatcctaaat-agttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G850355_T02 (Zea mays), 5'ss of exon 10
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggtgcttct-gtttctatttccggaacatccttactgagttactgactgattcgg-------gggttgcag
||||||||| || ||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||  |    |    ||| | ||| ||   |    |||||||| | | ||||||| | || ||| |       |  ||||||
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgc---aacccacttgtagttgcttagtttaaaacatcctaaat-agttactaattggttctgcatcttggacttgcag

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA08G17810.2 (Glycine max), 5'ss of exon 9
-------------------------------------ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtag-gtgcttctgtttctatttccggaacatccttactgagttac--------tgactgattcgggggttgcag----------------
                                      |||||||| || |||||||||||||||||  |||| || || || ||||||||||| |||||||| | || | ||  |||   |     | | | |   | ||  |||   |  ||         ||||   ||      || | |                
TATCATTTCTATGGTTGACTTGATTGTCCACTTACAGGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA15G41330.1 (Glycine max), 5'ss of exon 10
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggt-----gcttctgtttctatttccggaacatccttactgagttactgactgattcgggggttgcag----------------------
 |||||||| || |||||||||||||||||  |||| || || || ||||||||||| |||||||| |      |  |     | || ||     | |      | | ||||| |||   | ||||   ||      || | |                      
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGGgtaggagcatgacattccaagtttatgcactaaataattataaaaccttaatgaa--aatgacatgtttaactattactgtccattaggaggcccaaacatt

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA03G16660.1 (Glycine max), 5'ss of exon 10
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggtgcttctgtttctatttccggaacatccttactgagttactgactgattcgggggttgcag-----------------------------
 |||||||| || ||||||||||||||| |  |||| || || || ||||||||||| |||||||| |    | | |   ||     | |||   | ||| ||   |  |   ||| |   | |||      |||                                
GTACACAGATGATATGGAGCTTGATGATTCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtagga---gcatgctatttcaagtttatgcactgaa-atttattttatattatttggttattttcatcttgacatttgacctatggcacatccctccaaacca

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtag-gtgcttctgtttctatttccggaacatccttactgagttac--------tgactgattcgggggttgcag----------------
 |||||||| || |||||||||||||||||  |||| || || || ||||||||||| |||||||| | || | ||  |||   |     | | | |   | ||  |||   |  ||         ||||   ||      || | |                
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT1G16470.1 (Arabidopsis thaliana), 5'ss of exon 10
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgt-cttgtaggtgcttctgtttctatttccggaacatccttact-gagttactgactgattcgggggttgcag-----------------------
 ||||||||||||||||| ||||| |||||||| || || || ||  ||||  ||||||||||||| || |   |      |  | ||   |  |      | |  | |   |||||     |  ||||   | |  ||                        
GTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGgtaagtacaaatctacattattattagaaagtagttcgcctgataatcagagttcacttcatattcatagatcacactctcagtgtgactgatagattac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88517083|gb|CI444737.1|CI444737
EST:     ATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88956166|gb|CI092454.1|CI092454
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88269320|gb|CI380618.1|CI380618
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAAATATTGAAATTGGAGTTATTCGAT
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAAC-AATATTGAAATTGGAGTTATTCGAT
EST: gi|27554138|gb|CA998038.1|CA998038
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|27576119|gb|CA998813.1|CA998813
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86258904|gb|CI004448.1|CI004448
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88461191|gb|CI547371.1|CI547371
EST:     ATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88985654|gb|CI016363.1|CI016363
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|3766855|gb|AU030965.1|AU030965
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88203677|gb|CI203526.1|CI203526
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|163917780|gb|EG711302.1|EG711302
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|89170298|gb|CI039575.1|CI039575
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|89178076|gb|CI391255.1|CI391255
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|11414339|gb|AU165132.1|AU165132
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88289213|gb|CI553189.1|CI553189
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACCATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88239782|gb|CI238944.1|CI238944
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88263428|gb|CI367202.1|CI367202
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|89197813|gb|CI013803.1|CI013803
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86422896|gb|CI060469.1|CI060469
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|33661637|gb|CF292604.1|CF292604
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86844003|gb|CI336703.1|CI336703
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88977911|gb|CI384393.1|CI384393
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88243911|gb|CI243033.1|CI243033
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88254319|gb|CI352945.1|CI352945
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86546047|gb|CI186253.1|CI186253
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86493119|gb|CI135752.1|CI135752
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88852675|gb|CI008868.1|CI008868
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|89197364|gb|CI009984.1|CI009984
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88523673|gb|CI451521.1|CI451521
EST:     CCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: CCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86509053|gb|CI151686.1|CI151686
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88965320|gb|CI009356.1|CI009356
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|3767760|gb|AU031787.1|AU031787
EST:     ATGGAGCTTGATGATGCCATCCANACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88995416|gb|CI036991.1|CI036991
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88375025|gb|CI523290.1|CI523290
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCCACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88236034|gb|CI235236.1|CI235236
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88452218|gb|CI552926.1|CI552926
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88221720|gb|CI221676.1|CI221676
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88252208|gb|CI350636.1|CI350636
EST:     CTGGAGCTTGATGATGCCATCCATACTTCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: -TGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|33656047|gb|CF278661.1|CF278661
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|87028711|gb|CI349430.1|CI349430
EST:     ATGGAGCTTGATGATGCCATCCATACTCCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|87032496|gb|CI266136.1|CI266136
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|89190657|gb|CI392510.1|CI392510
EST:     TGATGCCATCCATACTGCCATTTCGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: TGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88473338|gb|CI410609.1|CI410609
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86494880|gb|CI137513.1|CI137513
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|87029179|gb|CI276447.1|CI276447
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88995615|gb|CI022938.1|CI022938
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86602433|gb|CI264761.1|CI264761
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|29613823|gb|CB618836.1|CB618836
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATGGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88985585|gb|CI016294.1|CI016294
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86826710|gb|CI364238.1|CI364238
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86868986|gb|CI334358.1|CI334358
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88385141|gb|CI561797.1|CI561797
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88489108|gb|CI426380.1|CI426380
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88201510|gb|CI201865.1|CI201865
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88259408|gb|CI363701.1|CI363701
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86525993|gb|CI166199.1|CI166199
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|89171067|gb|CI040344.1|CI040344
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|58586930|gb|CF985238.1|CF985238
EST:     ATGGAGCTTGATGATGCCATCCATACTGCTATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCGCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88503429|gb|CI430935.1|CI430935
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|396941624|gb|HO188281.1|HO188281
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|33655926|gb|CF278540.1|CF278540
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88220149|gb|CI219709.1|CI219709
EST:     CATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: CATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88240749|gb|CI239911.1|CI239911
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88456958|gb|CI529159.1|CI529159
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATGTCAGCCAACAATAGTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|25797837|gb|CA753798.1|CA753798
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88488525|gb|CI425796.1|CI425796
EST:     TCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTG-AATTGGAGTTATTCGATC
genomic: TCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88544425|gb|CI472522.1|CI472522
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|88963243|gb|CI026908.1|CI026908
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|86834955|gb|CI346039.1|CI346039
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|33803410|gb|CF327579.1|CF327579
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACGATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|33655042|gb|CF277656.1|CF277656
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATCGAAATTGGAGCTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
EST: gi|5771116|gb|AU078005.1|AU078005
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATT-GCAT
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCG-AT
EST: gi|88901506|gb|CI008934.1|CI008934
EST:     ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG                         ATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC
genomic: ATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttg ... ggggttgcagATATGAGGGTCAAATCTCAGCCAACAATATTGAAATTGGAGTTATTCGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtaggtgcttctgtttctatttccggaacatccttactgagttactgactgattcgggggttgcag

- - - - - - -  GGAGCT
- - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG