1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattctatcactaaagagttccctttgaagtggtttttagagtttgactaaccgtgttgttttcag
species | Oryza sativa |
transcript | LOC_Os02g41590.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAAGAGAG GTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAEST: gi|89167316|gb|CI252847.1|CI252847
genomic: CCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACA-AGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGA
EST: AGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGATEST: gi|27576661|gb|CA999355.1|CA999355
genomic: AGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAT
EST: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCTEST: gi|300215864|gb|HO088490.1|HO088490
genomic: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCT
EST: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGATEST: gi|38470488|gb|CF954619.1|CF954619
genomic: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAT
EST: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGATEST: gi|89199046|gb|CI253120.1|CI253120
genomic: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAT
EST: AGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCGGCACCCTTTATCTGTGAGTTTTTCCGTGATEST: gi|30227286|gb|CB965178.1|CB965178
genomic: AGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAT
EST: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGATEST: gi|88694901|gb|CI738939.1|CI738939
genomic: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAT
EST: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCEST: gi|66922324|gb|CX109172.1|CX109172
genomic: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTC
EST: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGATEST: gi|2311475|gb|C27630.1|C27630
genomic: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAT
EST: NCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGGATGAACCTCTCTTCACCCTTTATCTGTGAGTTTT-CCGTGAEST: gi|88729190|gb|CI752700.1|CI752700
genomic: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTG-ATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGA
EST: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG GTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAT
genomic: CCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattcta ... ttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAGgtaaattctatcactaaagagttccctttgaagtggtttttagagtttgactaaccgtgttgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC