1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTCGCTGCTGATGCAAAGTTGAACTTTGATGACAATGCTGCCTTTAGGCAGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAGgtatattactgcttgccatttcctttattcactttctcttgtagtctgtgtgttcctttatctctatctatgtattttttttttcatttaccccttcttt...
species | Oryza sativa |
transcript | LOC_Os02g40830.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGGAAGATCCCAGAGAG GTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATTEST: gi|218478127|gb|FG953382.1|FG953382
genomic: CAGGAAGATCCCAGAGAGgtatattact ... acctttacagGTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATT
EST: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAG GTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATTEST: gi|66913068|gb|CX099916.1|CX099916
genomic: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAGgtatattact ... acctttacagGTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATT
EST: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAG GTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATTEST: gi|163921201|gb|EG714126.1|EG714126
genomic: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAGgtatattact ... acctttacagGTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATT
EST: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAG GTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATTEST: gi|163929534|gb|EG713477.1|EG713477
genomic: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAGgtatattact ... acctttacagGTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATT
EST: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAG GTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATTEST: gi|13420568|gb|AU174658.1|AU174658
genomic: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAGgtatattact ... acctttacagGTGGCTGCTGCCAAAGCTGACTTGAACTACATTGGGCTTGATGGAGAAATT
EST: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAG GTGGCTGCTGCCAAAGCTGACTTGAACTAC
genomic: AGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAGgtatattact ... acctttacagGTGGCTGCTGCCAAAGCTGACTTGAACTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCGCTGCTGATGCAAAGTTGAACTTTGATGACAATGCTGCCTTTAGGCAGAAAGAGATATTTGCCATGCGTGACACAACACAGGAAGATCCCAGAGAGgtatattactgcttgccatttcctttattcactttctcttgtagtctgtgtgttcctttatctctatctatgtattttttttttcatttaccccttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttc