Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCTGTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaattttatggctaatgttgcttgtgattgttaaacttttctttattagcttaatcagcttcatttacgaagaacaccgatctatgtacaaat...

Basic information

species Oryza sativa
transcript LOC_Os02g39570.6
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g39570.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G007647_T01 (Zea mays), 5'ss of exon 10
GGTTTCTGTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaattttatggctaatgttgcttgtgattgttaaact--tttctttattagc-ttaatcagcttcatttacgaagaacaccgatctatgtacaaat
||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| |||||| || |||| |||||||| || || || ||  | |||||    ||    | |       |||| |||   ||  ||       |  ||||   ||   | ||||   |   |   |    | |     |  |||||| | 
GGTTTCTGTAAACACTGCTGCTCGGAGGGAAATTCTAGATATTGCTGAAATCTTCCGAGCAAAACCTATTGACGTTTCTGACCATACAGTAACCCTTCAGgttcgctt--cctaacaatgtgtgtttcttccaatacttccgtcagtgcctttgccagtactgatcatactagatccggtgttagaaaaggcattgtacaca-

upper sequence: LOC_Os02g39570.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G407044_T01 (Zea mays), 5'ss of exon 10
GGTTTCTGTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaattttatggctaatgttgcttgtgattgttaaacttttctttattagcttaatcagcttcatttacgaagaacaccgatctatgtacaaat--
||||||||| ||||||||||||||||  || || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||| || ||| | |||||     |  |   |       |||| ||      | |  | |  ||| ||   |   |   ||||  ||  |    |  |||  |   ||  |    ||  
GGTTTCTGTCAACACTGCTGCTCGGAAGGAAATCCTAGATATTGCTGAAATCTTCCGAGCAAAACCTGTTGATGTTTCTGACCACACAGTAACGCTTCAGgttggcatcctaacagtttgtgtgtttctcccagatttccatcggttcctttgcacactgcacagccacaagt-tatatcacattg-cttaaatgtttattc

upper sequence: LOC_Os02g39570.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv00s0220g00110.t01 (Vitis vinifera), 5'ss of exon 10
GGTTTCTGTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaattttatggctaatgttgcttgtgattgttaaact-tttctttattagct-taatcagcttcatttacgaagaacaccgatctatgtacaaat
| || |||| |||||||||||| |||| ||  | || |||||||||   || |||||||| ||| |||||||||| |||||||||||  ||||  || |||| |   |  |||     | |||||  |||||   | |   | | | ||||||||   | || ||| |||| |  |      |  | | |||  | ||    
GATTGCTGTAAACACTGCTGCTAGGAGGGATGTTCTTGATATTGCTAGCATTTTCCGGGCCAAAGCTGTTGATGTGTCTGATCACACAATTACCCTAGAGgtgaaaatggtttacc--caaatgtctcttgttggtctagcagtatctctttatttcttatattcaccttcctgaattctataagcagttctgggcactgca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88488548|gb|CI425819.1|CI425819
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTNATCACACTGTTACGTTACAN                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88539198|gb|CI468290.1|CI468290
EST:     ATGTTTCTGATCACAGCTGTTACGTTACAG                         CTTACT-GGGATTCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
genomic: ATGTTTCTGATCACA-CTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGA-TCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
EST: gi|29676546|gb|CB672821.1|CB672821
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88538414|gb|CI467440.1|CI467440
EST:     CACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGNTTGCATTACAAAGGCTNTTGGAGCCT
genomic: CACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88512954|gb|CI440460.1|CI440460
EST:     CTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAANATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: CTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88284518|gb|CI405964.1|CI405964
EST:     TCTTCCGGGCAAAATCTGGTGATGTTTCTGATCACACTNTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|29656805|gb|CB653080.1|CB653080
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88832223|gb|CI017457.1|CI017457
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|15853702|gb|BI806498.1|BI806498
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88478672|gb|CI415943.1|CI415943
EST:     GGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: GGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88906495|gb|CI375567.1|CI375567
EST:     TCTTCCTGGCAAAATCGGTTGATGTTTCTGATCACACTGTTACGTTACAGG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACA-Ggtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
EST: gi|32948291|gb|BP184863.1|BP184863
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88508589|gb|CI436095.1|CI436095
EST:     AATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: AATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|32948361|gb|BP184933.1|BP184933
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
EST: gi|86522997|gb|CI163203.1|CI163203
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88481174|gb|CI418445.1|CI418445
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACNTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGGTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|33682201|gb|CF310440.1|CF310440
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88502715|gb|CI430221.1|CI430221
EST:     TGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88552259|gb|CI480930.1|CI480930
EST:     TTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|87021293|gb|CI295352.1|CI295352
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88273463|gb|CI393869.1|CI393869
EST:     CTTCCGGGCGAAATCTGGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: CTTCCGGGCAAAATCT-GTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|88513717|gb|CI441223.1|CI441223
EST:     TCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTNCATTACAAAGGCTGTTGGAGCCT
genomic: TCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT