1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATGTTTAAGGATTTCCACAGGAGGCTGCAGCGGGACCTAAAAAAGATAGTGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaacttttcatgtttgctctggctctctcctgattgcagaagaacactggccaaaccagaaactttattgtgatattggaacttggaagctacagctacattctgtttatttcag
species | Oryza sativa |
transcript | LOC_Os02g38340.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTEST: gi|86498313|gb|CI140946.1|CI140946
genomic: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCT
EST: GGATGCACGAGTCCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCAACCTNATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCEST: gi|218496454|gb|FG958516.1|FG958516
genomic: GGATGCACGAGT-CCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCT-ATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGC
EST: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCCACCTATAGAAGTAAATGTAGTTAGCCATCCTATTEST: gi|86498887|gb|CI141520.1|CI141520
genomic: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATT
EST: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTEST: gi|27548806|gb|CA767552.2|CA767552
genomic: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCT
EST: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTEST: gi|88225123|gb|CI225039.1|CI225039
genomic: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCT
EST: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTEST: gi|218498722|gb|FG947457.1|FG947457
genomic: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCT
EST: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTEST: gi|218491484|gb|FG957663.1|FG957663
genomic: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCT
EST: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCTEST: gi|218485657|gb|FG944726.1|FG944726
genomic: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCT
EST: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAG GCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCT
genomic: TGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaactt ... tttatttcagGCCCAACCTATAGAAGTAAATGTAGTTAGCCATCCTATTCAAAGATATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGTTTAAGGATTTCCACAGGAGGCTGCAGCGGGACCTAAAAAAGATAGTGGATGCACGAGTCCTTGCATCTAATGCTCGACTTGGTGGAGATGCAAAGgtacaaacttttcatgtttgctctggctctctcctgattgcagaagaacactggccaaaccagaaactttattgtgatattggaacttggaagctacagctacattctgtttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG