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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatgccactgccgtaccttaattgcacttgaaaattactctatactttgatcattgagagattattgttcagctatagtctggcattgaatgctgtggtttcacgtctttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g38060.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38060.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G876003_T02 (Zea mays), 5'ss of exon 7
GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatgccactgccgtaccttaattgcacttgaaaattactctatactttgatcattgagagattattgttcagctatagtctggcattgaatgctgtggtttcacgtctttgcag
|||| |||||||| |||||||||||||||| | ||| |||||||||| ||||   |   |    |||||| |    || ||   || |||  |   |             | |||   | |  ||  ||                                    
GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttcacttttttgctaccttgaagctacctgg--atcacttgaccttcatgctgaatccggcttaccatgcccctgcag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88240834|gb|CI238685.1|CI238685
EST:     GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
EST: gi|86541932|gb|CI182138.1|CI182138
EST:     GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
EST: gi|88215537|gb|CI215386.1|CI215386
EST:     GATGCGAAAAACGAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
EST: gi|88508457|gb|CI435963.1|CI435963
EST:     GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCCAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
EST: gi|27547869|gb|CA765880.2|CA765880
EST:     GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC