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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGACGTATTCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttcttgtgcttcttactctatccatgcatatgcctttatctattttgttaaatctaatgaaatatgttttcttggcag

Basic information

species Oryza sativa
transcript LOC_Os02g35590.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88520540|gb|CI448194.1|CI448194
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|88251938|gb|CI350366.1|CI350366
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|88263359|gb|CI367133.1|CI367133
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|88368430|gb|CI561504.1|CI561504
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGGGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|88456348|gb|CI560951.1|CI560951
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|163927722|gb|EG712482.1|EG712482
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|88503640|gb|CI431146.1|CI431146
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|88512762|gb|CI440268.1|CI440268
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|88521271|gb|CI448453.1|CI448453
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
EST: gi|88508803|gb|CI436309.1|CI436309
EST:     TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATG                         TTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA
genomic: TCCTCGCACCTCAGATTTATGCAGCAGTGACTCGTTTTCAAATTAACATGgtactgttct ... ttcttggcagTTAAATTATCCCACTCTCGCGAGGCTCCATGAGGAGTATATGAAACATCCA