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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcagcatcttgttcttttactgctggatgtgtaacaaactaaaatcattagcatatggttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g33080.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g33080.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G073950_T01 (Zea mays), 5'ss of exon 8
GTTCCCCTTGTTGCTTCTAACAGGATAGGAAGGGAAACCGTTGAGACTGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag-catct-tgttcttttactgctggatgt---gtaacaaactaaaatca-----ttagcatatggttgtgcag
|| || ||||||||||| ||| |||| || || ||||| ||||| |||||||||||  | ||| | ||||| ||||  |||||||| ||||| ||||||||| |    | | | | |  || ||||  | |||     || | |    | || ||     | |    |    | |||||
GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGCATGGCAAGAGCTCGATAACCTTCTATGGGAATTCCTTCATTGCAGgtaatctagctcgtgtatatctttatacttgtagatagaaggttaaatgtcagaaacacgacttcaattgaattctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88201190|gb|CI201545.1|CI201545
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|88902349|gb|CI374957.1|CI374957
EST:     GGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: GGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|86256202|gb|CI007918.1|CI007918
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|109713088|gb|CI105696.1|CI105696
EST:     AATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: AATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|226698500|gb|GO497078.1|GO497078
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|58600835|gb|CK011363.1|CK011363
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|88830953|gb|CI080377.1|CI080377
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|88201556|gb|CI201911.1|CI201911
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|86499502|gb|CI142135.1|CI142135
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|88220016|gb|CI219576.1|CI219576
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGATAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|29667322|gb|CB663597.1|CB663597
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|58682108|gb|CK070795.1|CK070795
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|66923772|gb|CX110620.1|CX110620
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|29639686|gb|CB644695.1|CB644695
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|27577312|gb|CB000007.1|CB000007
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAC                         GGCCAACCGGTGAAATTGTGAAGCTTGCAGATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|4715119|gb|AU056236.1|AU056236
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|86850816|gb|CI338792.1|CI338792
EST:     AAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: AAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|55410603|gb|CV722979.1|CV722979
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|88840913|gb|CI080367.1|CI080367
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|29671593|gb|CB667868.1|CB667868
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|86503748|gb|CI146381.1|CI146381
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
EST: gi|88440825|gb|CI693394.1|CI693394
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGT
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGT
EST: gi|29671592|gb|CB667867.1|CB667867
EST:     TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAG                         GGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC
genomic: TGAGCATGGTGAAAGCACTATAACATTCTTCGGGAATTCATTCATAGCAGgtaatttcag ... ggttgtgcagGGCCAACCGGTGAAATTGTGAAGCTTGCAAATGACAAAGATGAAGACGTTC