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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGGATGCTGTATTGACTCCCTGTGCTCACCGTTTATGCCGAGAATGTCTCTTGTCTAGTTGGCGGAGTGCATCAGCAGGCCTTTGTCCTGTCTGTAGgtagattatgctcactgttccttatttatctctgaattttgtttacttggtatattctgatctttatcttttgattccactgctacag

Basic information

species Oryza sativa
transcript LOC_Os02g32570.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G057504_T01 (Zea mays), 5'ss of exon 4
TTGAGGATGCTGTATTGACTCCCTGTGCTCACCGTTTATGCCGAGAATGTCTCTTGTCTAGTTGGCGGAGTGCATCAGCAGGCCTTTGTCCTGTCTGTAGgtagattatgctca------ctgttccttatttatctct-gaattttgtttacttggtatattctgatctttatc-ttttgattccactgctacag
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||  ||||| |        ||||  ||  ||  | |||  || | |  || | ||  |  || | || |   ||  |||||||  | |  | |||
TTGAGGATGCAGTATTAACTCCCTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTATCTAGTTGGCGGAGTGCGACAGCAGGCCTTTGTCCTGTCTGTAGgtattttatgtttcaatcttctgtctctctttgttttcttaaagtattcttccatgtcaacttgtcatgtccttcactttgattatattattgcag

upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 15
TTGAGGATGCTGTATTGACTCCCTGTGCTCACCGTTTATGCCGAGAATGTCTCTTGTCTAGTTGGCGGAGTGCATCAGCAGGCCTTTGTCCTGTCTGTAGgtag-attatgct-cactgtt----ccttatttatctctgaattttgtttacttggtatattctgatctttatcttttgattccactg--ctacag--------------------------------------------------
|||| ||||| || || || || ||||||||||| |||||||| ||||| |||||||| |||||||| | |||  || | ||| | |||||||| ||||||||  || | ||| | |  ||      ||   |||||   | ||   |||  |||    |   | |   || |||||  ||| || |    | |||                                                  
TTGAAGATGCAGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAGgtattatcaagcttctccattagaattttggatatcttctatttaactttgattgaaggaagttcaaaattgtcttt--attgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttattttacag

upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 16
TTGAGGATGCTGTATTGACTCCCTGTGCTCACCGTTTATGCCGAGAATGTCTCTTGTCTAGTTGGCGGAGTGCATCAGCAGGCCTTTGTCCTGTCTGTAGgtag-attatgctcactgttccttatttatctctgaattttgtttacttggtatattctgatctttatcttttgattccactgctacag---------------------------------------------------------
|||| |||||||| || || || ||||||||||| |||||||| ||||| |||||||| |||||||| | |||  |  | ||| | |||||||| ||||||||  || | ||| ||   |    ||||    ||   || | |||| || | |      ||  || |   || |  |  | |||   ||                                                         
TTGAAGATGCTGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaagctaacccattagaattttcgact--cttctatttaatttggactgaaggaagttcaaaatt-gtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttactttacag

upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 15
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 15
TTGAGGATGCTGTATTGACTCCCTGTGCTCACCGTTTATGCCGAGAATGTCTCTTGTCTAGTTGGCGGAGTGCATCAGCAGGCCTTTGTCCTGTCTGTAGgtagattatgctcactgt--------tccttatttatctctgaat--------tttgtttacttggtatattctgatctttatcttttgattccactgctacag-------------------------------------------
|||| ||||| || |||||||| |||||||| |||||||||||||| ||||||||| |||||||||| | | |  |  | ||  |||| ||||| ||||||||  || |  | | |||        |  ||||||  || | |||        ||| | ||||   |||||| | || ||| | ||||| |  |  |  || |                                            
TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatatttt-atttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag