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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCTTCAGGCTAAGAAGGACCAGTTGAGAATTTGGACAGGATTTAAGCCACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccctgttctcacaagtagtgtattcaacatgatcatgcgattgaagctaatttgctttgtgttgatcctttcatag

Basic information

species Oryza sativa
transcript LOC_Os02g32350.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G136296_T03 (Zea mays), 5'ss of exon 9
TGAGCTTCAGGCTAAGAAGGACCAGTTGAGAATTTGGACAGGATTTAAGCCACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccctgttctcacaagta---gtgtattca--------acatgatcatgcgattgaagctaatttgcttt-gtgttgatcctttcatag
 || || |||||||| ||||| || |||||||| |||||||| || |||||||| ||||||||||||||||| || || ||||||||||| |||||||||||| ||      |||||  | |     |||||||||        |||| ||  |  ||| | | ||| |||  ||   ||||||||  |||  ||
AGAACTACAGGCTAAAAAGGATCAATTGAGAATCTGGACAGGGTTCAAGCCACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtcttacattctccgatgacagtgtgtattcatcatgttcacataattgtatgatagtaactattttttttccatgttgatctcttcgcag

upper sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 8
lower sequence: AC207890.3_FGT002 (Zea mays), 5'ss of exon 8
TGAGCTTCAGGCTAAGAAGGACCAGTTGAGAATTTGGACAGGATTTAAGCCACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccctgttctcacaag-tagtgt--attca---------acatgatcatgcgattgaagctaatttgcttt-gtgttgatcctttcatag
 || ||||||||||| ||||| || |||||||| |||||||| ||||||||||||| ||||||||||||||| || || ||||||||||| | |||||||||| ||    ||||| || | | ||||||  |||||         |||| ||  |  ||| | |  || |||  |||  |||||| |  |||| ||
AGAACTTCAGGCTAAAAAGGATCAATTGAGAATCTGGACAGGGTTTAAGCCACCAGCGACAAACTCGAAGCCCATTCATGACCAGAAATTTAATGGAAAAgtgtgtcttatgttcccagatgatagtgtctattcatcatgattcacataattgtatgatagtaaatatttttttttcatgttgacctcttcacag

upper sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
TGAGCTTCAGGCTAAGAAGGACCAGTTGAGAATTTGGACAGGATTTAAGCCACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccctgttctcacaagtagtgtattcaacatga-tcatgcgattgaagctaa---tttgctttgtgttgatcctttcatag---------
 || ||||| || |||||| | |  |||||| | ||||||   | |   || |||   ||||| |||||| |||| ||||||||||| || |||||||||||||||     ||   || ||    |   |  | | |   |  |   | || |  |      |   ||| |||  |||   |  | |         
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatcctatcttttataaatggaattttaccctaattttatgtccatctcatt-tggcctttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674463|gb|CB670738.1|CB670738
EST:     CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAA                         GTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGA
genomic: CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGA
EST: gi|29623577|gb|CB628588.1|CB628588
EST:     CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAA                         GTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
genomic: CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
EST: gi|58658629|gb|CK047309.1|CK047309
EST:     CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAA                         GTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGGTGATGACGCAGCT
genomic: CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
EST: gi|29625604|gb|CB630615.1|CB630615
EST:     CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAA                         GTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
genomic: CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
EST: gi|29656202|gb|CB652477.1|CB652477
EST:     CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAA                         GTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
genomic: CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
EST: gi|58684285|gb|CK072972.1|CK072972
EST:     CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAA                         GTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
genomic: CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
EST: gi|58606427|gb|CK034460.1|CK034460
EST:     ACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAGAG                         GGTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGC
genomic: ACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAA-AAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGC
EST: gi|29644258|gb|CB649265.1|CB649265
EST:     CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAA                         GTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
genomic: CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT
EST: gi|29623984|gb|CB628995.1|CB628995
EST:     CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAA                         GTTGTAGAGGTTGTGAGTGGGGATTGCATCATTTTTGCTGATGACGCAGCT
genomic: CACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccc ... cctttcatagGTTGTAGAGGTTGTGAGTGGGGATTGCATCATTGTTGCTGATGACGCAGCT