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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGATCTTGTTCTGTCTTATTTGCAAAATCATTgtaagttactttgtattgattgagatttatgttcatttgctgcagtttgaatatattttttaatctgattgatttttttttctttcgtcttttttctgtggctatttag

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 8
CGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGATCTTGTTCTGTCTTATTTGCAAAATCATTgtaagttactttgtattg-attgagatttatgttcatttgctgca-gtttgaatatattt-tttaat-ctgattgatttttttttctttcgtcttttttctgtggctatttag
| ||| || ||||| || ||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||  || ||||  ||  | ||  |||    |  | |||   ||     | |||| |||  | |||| |    | | ||  |  |  ||   |  |    || |  ||
CAAAAGATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATGCTGTTGTATCTGGTGCTATTGGATCTTGCTCAGTCTTGTTTGCAAAATCATTgtaggttatattttatttcatcaaaatccatgcatctgggatgcttattctttcagatttatttggtgctgactaccatgtgttgttccccactccctgtttc--ctgtccag

upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 5
CGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGATCTTGTTCTGTCTTATTTGCAAAATCATTgtaagttactttgtattgattgag-atttatgttcatttgctgcag---tttgaatatattttttaatctgattgatttttttttctttcgtcttttttctgtggctatttag
| ||| || ||||| || ||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||||| || ||||| |||||||| |||||||| ||||  || ||||   | |  ||  |||    |  | ||| |    ||  | || | |||    |||| ||   | | ||     |     ||     |  || | |||
CAAAAAATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCTTATGCTGTTGTATCTGGTGCTATTGGGTCTTGCTCAGTCTTGTTTGCAAAGTCATTgtaggttatattttattttgtaaacatccatgcatctaggatgctgattctttcagatttatttggtgctgactgccatgtgttatccccactccttcctgttccctgtctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688305|gb|CK076992.1|CK076992
EST:     ATTGTATCTGGTGCTATTGGATCCTGTTCTGTCTTATTTGCCAAATCATT                         GTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTG
genomic: ATTGTATCTGGTGCTATTGGATCTTGTTCTGTCTTATTTGCAAAATCATTgtaagttact ... ggctatttagGTCAAACATGCTGAGGCTAACAATGAGCAGCAGATACCAGTTCCATAGCTG