1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAATACTGAGAAGATTGAAGCGGCTGCAAAGAAGAAAGATGAAGGGAATGCTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGgtcacacatcaggctttttgtttaaaagaaagacttaaacctgttttacactgtactgatgcaagtatgatttgctctatatcag
species | Oryza sativa |
transcript | LOC_Os02g28980.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAG GCTTTAAACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGEST: gi|218501934|gb|FG968124.1|FG968124
genomic: CTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGgtcacacatc ... tctatatcagGCTTTAAACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAG
EST: CTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAG GCTTTAAACTTCATCCGAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAEST: gi|29644965|gb|CB649972.1|CB649972
genomic: CTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGgtcacacatc ... tctatatcagGCTTTAAACTTCATCC-AGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCA
EST: AGATATGGAAAG GCTTT-AACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAGEST: gi|58677214|gb|CK065901.1|CK065901
genomic: AGATATGGAAAGgtcacacatc ... tctatatcagGCTTTAAACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAG
EST: CTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAG GCTTTAAACTTCATCGAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAG
genomic: CTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGgtcacacatc ... tctatatcagGCTTTAAACTTCATCCAGTATGACAGCTCCTTCAGTGAAGAAGAGAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATACTGAGAAGATTGAAGCGGCTGCAAAGAAGAAAGATGAAGGGAATGCTTGGTTTAAGATGGAAAAGTATGCCAGGGCTTCTAAGAGATATGGAAAGgtcacacatcaggctttttgtttaaaagaaagacttaaacctgttttacactgtactgatgcaagtatgatttgctctatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA