1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGgtgagatatgcaccatagttattattttgtcgctaataattcattatcaccacactggagcaaatattagaatagactggtaaattgcaatcaacttctgactagagtttttttttttcttattgcaaatgcag
species | Oryza sativa |
transcript | LOC_Os02g19420.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGG GATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAEST: gi|88529030|gb|CI457321.1|CI457321
genomic: CTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGgtgagatatg ... gcaaatgcagGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACA
EST: CTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGG GATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAEST: gi|88533975|gb|CI462655.1|CI462655
genomic: CTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGgtgagatatg ... gcaaatgcagGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACA
EST: CTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGG GATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACA
genomic: CTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGgtgagatatg ... gcaaatgcagGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGgtgagatatgcaccatagttattattttgtcgctaataattcattatcaccacactggagcaaatattagaatagactggtaaattgcaatcaacttctgactagagtttttttttttcttattgcaaatgcag
- - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG