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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAGGATATTTCTGAGCTAAATGCTGATCAAGAAAGAATAGTATTGACAGGGCTGCGAGATTATCTTCGTGTGCTTATCACACGTGGAAATATAAACGgtgagtgcaacttgcttacactgttattgtgaatttgtgatcctagatagcacatcgtgttcggtttgctaaaatgttaatttcacacatactttgccat...

Basic information

species Oryza sativa
transcript LOC_Os02g17460.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17460.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G388148_T01 (Zea mays), 5'ss of exon 7
GATCAGGATATTTCTGAGCTAAATGCTGATCAAGAAAGAATAGTATTGACAGGGCTGCGAGATTATCTTCGTGTGCTTATCACACGTGGAAATATAAACGgtgagtgcaacttgcttacactgttattgtgaatttgtgatcctagatagcacatcgtgttcggtttgctaaaatgttaatttcacac----atactttgccat
||||| |||||||||||| |||||||||  |||||||   |||||||||| ||| ||||||| ||||| || ||| |||||||||||||||| ||||| ||||||||   | |   |      ||  |   ||  ||| || |    |        |||   |   ||||    ||  |  || |  |    | | ||||    
GATCAAGATATTTCTGAGATAAATGCTGCACAAGAAAACCTAGTATTGACTGGGTTGCGAGAGTATCTCCGGGTGATTATCACACGTGGAAAAATAAATGgtgagtgtctcattgctgtgtccttcata-aaacatgtcattcagtttttttacgtgtgaatgcaatgcttccgtgggacatttaagccagtaaaatttga---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88997636|gb|CI390266.1|CI390266
EST:     AGGGCTGCGAGATTATCTTCGTGTGCTTATCACACGTGGAAATATAAACG                         CAACCAAATTCTCGTTAGAGACAGCAATGGAATTGGATTCCCGGAGGCATC
genomic: AGGGCTGCGAGATTATCTTCGTGTGCTTATCACACGTGGAAATATAAACGgtgagtgcaa ... ggtgccacagCAACCAAATTCTCGTTAGAGACAGCAATGGAATTGGATTCCCGGAGGCATC