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GTGCCAACCAAAGAGCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaattgtctcttctggtttattgcattattgtttgctcaattagtaaaaaaacctagatgagttttatgtcattatcttatttcccttttcttag...
species | Oryza sativa |
transcript | LOC_Os02g10070.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATAAGGCAATCGATGCTCTCCCTGTAACTGCTCATCCGATGAEST: gi|29614058|gb|CB619071.1|CB619071
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATAAGGCAATCGATGCTCTCCCTGTAACTGCTCATCCGATGAEST: gi|29667252|gb|CB663527.1|CB663527
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATGAAGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGAEST: gi|14571277|gb|BI118645.1|BI118645
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGAEST: gi|58599089|gb|CK009617.1|CK009617
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGAEST: gi|58611144|gb|CK038856.1|CK038856
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATAAGGCAATCGATGCTCTEST: gi|29614020|gb|CB619033.1|CB619033
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCT
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATAAGGCAATCGATGCTCTCCCTGTAACTGCTCATCCGATGAEST: gi|33794508|gb|CF323141.1|CF323141
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGAEST: gi|58678175|gb|CK066862.1|CK066862
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGAEST: gi|58668188|gb|CK056874.1|CK056874
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
EST: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG GTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
genomic: GCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaatt ... acggatgcagGTCATGTGTATGAGGCAATCGATGCTCTTCCTGTAACTGCTCATCCGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCAACCAAAGAGCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAGgtctgcaattgtctcttctggtttattgcattattgtttgctcaattagtaaaaaaacctagatgagttttatgtcattatcttatttcccttttcttag
- - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa