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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCCACTGGACACGTTGAGACACATCCTCCTCTGAGTCAACCTGCTTCATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagcatgagttattatctaccatttctatgttagtacctctttgttattttagttgacagctagaaatatactctctccgtccccaaatataaga...

Basic information

species Oryza sativa
transcript LOC_Os02g08120.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29668781|gb|CB665056.1|CB665056
EST:     ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG                         G---A---------GGA--A-GTGGAACTGGAACTGATTCCATAGGGTATG
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... accatgctagTTTCATTCATTTCAGGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATG
EST: gi|218486885|gb|FG955631.1|FG955631
EST:     ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG                         TTTCATTCATTTCAGGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATG
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... accatgctagTTTCATTCATTTCAGGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATG
EST: gi|55433296|gb|CV729710.1|CV729710
EST:     ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG                         TTTCATTCATTTCAGGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATG
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... accatgctagTTTCATTCATTTCAGGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATG
EST: gi|218478168|gb|FG952613.1|FG952613
EST:     ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG                         TTTCATTCATTTCAGGAGGAAGTGGAAC
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... accatgctagTTTCATTCATTTCAGGAGGAAGTGGAAC
EST: gi|117244367|gb|CT849708.1|CT849708
EST:     ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCT-C--CAG                         ------------CAGGTGGAAGTGGAACTGGAACTGATTCCATAGGGTATG
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... accatgctagTTTCATTCATTTCAGGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATG
EST: gi|29669563|gb|CB665838.1|CB665838
EST:     ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG                         TTTCATTCATTTCAGGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATG
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... accatgctagTTTCATTCATTTCAGGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATG