Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCTCCCCCTCAAAGATTTgtattcccacactctctattctgtcatcatattactgattcacttttattagtacaccattatgtataaattggacaatcagcaattgtattctcagtta...

Basic information

species Oryza sativa
transcript LOC_Os02g07960.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G335638_T01 (Zea mays), 5'ss of exon 8
GCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCTCCCCCTCAAAGATTTgtattcccacactctctattctgtcatcatattactgattcacttttattagtacaccattatgtataaattggaca----atcagcaattgtattctcagtta
|||||||||||| || |||||||| || |||||| |||||||||||||||||||||||||||| ||||||  | |||||| ||  |||||  |||  | |||  |||| || |   ||| || ||  || || ||||    ||    ||| |||||| | |  |||    
GCACATGCAAGATAATCAACTATCTGGTACCCTTAATGTCTTGCAGGATCTCCCCCTCAAAGACTTgtatgtctacactcccttctctgttgtcaattaacttgttcatttattacagttcatcacaatctacaaatcaagcagaacatctgcaattatttggtca----

upper sequence: LOC_Os02g07960.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G020986_T01 (Zea mays), 5'ss of exon 8
GCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCTCCCCCTCAAAGATTTgtattcccacactctctattctgtcatcatattactgattcacttttattagtacaccattatgtataaattggaca----atcagcaattgtattctcagtta
||||||||| || || |||||||| || |||||||||||||||||||||||| |||||||||||||||||  ||| || ||||  |||||  |||  | |||  |||| || |  |||| || ||| || || | |||   ||    | | |||||| | |   |||   
GCACATGCAGGATAATCAACTATCTGGGACCCTTGATGTCTTGCAGGATCTCTCCCTCAAAGATTTgtatgtccagaccctcttctctgttgtcagttaactt-ttcatttattatagttcatcataatctacagattaagcagaataactgcaattatttgggcag---