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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttcctcccattcttcatcatatccgcaatattagattcttccgagttaataggataagtaagaacaatttttttttacaagataatatgcttttaatag

Basic information

species Oryza sativa
transcript LOC_Os02g07760.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07760.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G119482_T01 (Zea mays), 5'ss of exon 9
GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttcctcccattcttcatcatatccgcaatattagattcttccgagttaataggataagtaagaacaatttttttttacaagataatatg-cttttaatag-
|| ||| | ||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||||| |||||||||||||  |   |   ||| ||| | ||   |   |      ||||| |  ||||| ||| | || |  || |||  |||||||  |||||  |   
GGTGCATTGAATGTTGTGATGGGTAATGCTGCTGAGATAGGTGATGCGTTGCTGCAGAGTACACAGgttttatttcctcccatcttgtcttgcatctgcagttttctttgtcttta---taatatgtcaagtaggaatacttgtggttgacactataatataacttttggttag

upper sequence: LOC_Os02g07760.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G128114_T03 (Zea mays), 5'ss of exon 8
GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttcctcccattcttcatcatatccgcaatattagattcttccgagttaataggataagtaagaacaatttttttttacaagataatatg-cttttaatag-
|| ||| |||||||||||||||| |||||||||||||||||||||||  |||| |||||||||||||| || |||||||||||  |   |   ||| | | | ||   |   |      ||||| |  ||||| ||| | |  |  || |||  |||||||  ||||| ||   
GGTGCACTAAATGTTGTGATGGGCAATGCTCCTGAGATAGGTGATGCATTACTGCAGAGTACACAGgt-ctgtttcctcccatcttgtcttgcatctgtacttttctttgtcttta---taatatgtcaagtaggaatactagtggttgacactataatataacttttgattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218498176|gb|FG949780.1|FG949780
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGC-AAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
EST: gi|218492832|gb|FG951181.1|FG951181
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCGACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
EST: gi|88288968|gb|CI520298.1|CI520298
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
EST: gi|218492318|gb|FG946726.1|FG946726
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
EST: gi|88519470|gb|CI447124.1|CI447124
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
EST: gi|218490731|gb|FG966180.1|FG966180
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
EST: gi|66918914|gb|CX105762.1|CX105762
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
EST: gi|218488132|gb|FG951352.1|FG951352
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
EST: gi|58694576|gb|CK083263.1|CK083263
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCNNNNNNNCTGAT
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGC-AAAAAACTGAT
EST: gi|218491346|gb|FG955033.1|FG955033
EST:     TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG                         GTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG
genomic: TGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAGgttctatttc ... cttttaatagGTCAGAAAGATTACATTCACAGGGTCAACAGCTGTTGGCAAAAAACTGATG