Sequence
atgc intronic sequence ATGC exonic sequenceATTCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCCgtaagtgatgcaagtaacattgtgcttagaaaatccgtgaagcacccatttcactttgtagatatagtaactccttgcaactcacgttgtacttaatttggcag
Basic information
species | Oryza sativa |
transcript | LOC_Os02g04750.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g04750.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G006937_T01 (Zea mays), 5'ss of exon 13
ATTCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCCgtaagtgatgcaagtaa-cattgtgcttagaaaatccgtgaagcacccatttcac----tttgtagatatagtaactccttgcaactcacgttgtact-taatttggcag
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ATTCTAAGTCCTTGTGAGACTTTCCCAAACATTGTTGTCGATTACCCgtaagtgatgcatgcaaatggcatatatatttttttagcaaaagatcatgcttacaaaattttcacttcagataaagaattaaaa-tcatggtgtattatcaattgacag
upper sequence: LOC_Os02g04750.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G468929_T01 (Zea mays), 5'ss of exon 13
ATTCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCCgtaagtgatgcaagtaacattgtgcttag-aaaatccgtgaagcacccatttcactttgtagatatagtaactccttgcaactcacgttgta-cttaatttggcag---
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ATCCTCAATCCTTGTGAGAGTTTTCCAAACATGGTTGTTGATCATCCgtaagtgatccaaatgacatagcatttagcaaaaatactattgaatgaattttatttt-caattgaaaaag--------gatttatattgtaacatgaattggcagttaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|38481879|gb|CF965948.1|CF965948EST: A-TCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCC ATATCCAGAATGCACGTCCTCAGTGCTTCAAGCTTTGGTGCTATTCAAAGA
genomic: ATTCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCCgtaagtgatg ... aatttggcagATATCCAGAATGCACGTCCTCAGTGCTTCAAGCTTTGGTGCTATTCAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCCgtaagtgatgcaagtaacattgtgcttagaaaatccgtgaagcacccatttcactttgtagatatagtaactccttgcaactcacgttgtacttaatttggcag
- - - - - - - - - - - - - - - TGGTGG