1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTTCTGAGTGGATAAAAACGAGCTCCGCAGAATCAGGAAATGTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgctatgaatatgaatcgaacattttgtcatcatgaaataagagattgctgtactcgcagaattttctttgcagacctctagttcactaacaatcctttccctctgtttccag
species | Oryza sativa |
transcript | LOC_Os02g02524.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTGTGGTGCCEST: gi|88505777|gb|CI433283.1|CI433283
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|88555056|gb|CI485284.1|CI485284
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTNTGAAGATATTAGCAAACACTGTCAGTGTACAAG TGCTACCATCGAGATCGACGGACGAACTATAACACCAAAGCATTGTGGTGCEST: gi|86539990|gb|CI180196.1|CI180196
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGAC-GACGAACTATAACACCAAAGCATTCTGGTGC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|88282038|gb|CI403434.1|CI403434
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|88527801|gb|CI455987.1|CI455987
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|427973|gb|D24119.1|D24119
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|88271484|gb|CI387537.1|CI387537
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|3767712|gb|AU031739.1|AU031739
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|86538953|gb|CI179159.1|CI179159
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCATACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|88836249|gb|CI371354.1|CI371354
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: TCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCEST: gi|33678092|gb|CF306331.1|CF306331
genomic: TCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCA-GTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCCEST: gi|88525538|gb|CI452543.1|CI452543
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
EST: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAG TGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
genomic: GTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgcta ... ctgtttccagTGCTACCATCGAGATCGACGACGAACTATAACACCAAAGCATTCTGGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTCTGAGTGGATAAAAACGAGCTCCGCAGAATCAGGAAATGTCAGCAGAGCACTTTGTGAAGATATTAGCAAACACTGTCAGTCTACAAGgtatgtgctatgaatatgaatcgaacattttgtcatcatgaaataagagattgctgtactcgcagaattttctttgcagacctctagttcactaacaatcctttccctctgtttccag
- - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA