1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCCTACAAGAAGTTGGCACTGCAGTGGCATCCAGATAAAAATGTAGATAACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataaacaaaattgaaccgtactaagtatttaatgttctatgagatgacattttctattaatatggttaatttaaaatactcatgcattccaagt...
species | Oryza sativa |
transcript | LOC_Os01g74580.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|88955408|gb|CI091500.1|CI091500
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|112786970|gb|EE591794.1|EE591794
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGACGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|86414025|gb|CI068232.1|CI068232
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|88835888|gb|CI370993.1|CI370993
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: TTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|86496076|gb|CI138709.1|CI138709
genomic: TTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|88840222|gb|CI079676.1|CI079676
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: AGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTNGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|86433951|gb|CI094294.1|CI094294
genomic: AGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|8527566|gb|AU092381.1|AU092381
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|87021666|gb|CI276065.1|CI276065
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|5004271|gb|AU069420.1|AU069420
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|94362193|gb|CI052510.1|CI052510
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: GCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTTEST: gi|89193984|gb|CI116421.1|CI116421
genomic: GCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
EST: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAG GTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
genomic: ACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataa ... caatttgcagGTTCTTGGGGATGAAGATAAACGTGTAAGATACGACCGAGGAGAGGATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCTACAAGAAGTTGGCACTGCAGTGGCATCCAGATAAAAATGTAGATAACCGAGAAGAAGCAGAAAACATGTTTCGAGAAATTGCTGCAGCTTATGAGgtatgaataaacaaaattgaaccgtactaagtatttaatgttctatgagatgacattttctattaatatggttaatttaaaatactcatgcattccaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT