1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgcagaaatcctccatcatttattcaggcgttcattttaatttgttgttggggaagaataattttagcatagatgagtcttcatttatataaa...
species | Oryza sativa |
transcript | LOC_Os01g71770.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG AATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAGEST: gi|58598133|gb|CK008661.1|CK008661
genomic: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgc ... aatgttacagAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
EST: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG AATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAGEST: gi|32947891|gb|BP184463.1|BP184463
genomic: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgc ... aatgttacagAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
EST: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG AATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAGEST: gi|58603513|gb|CK014041.1|CK014041
genomic: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgc ... aatgttacagAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
EST: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG AATCTGTGGACAGTATCATGCAAGAGTCACATGAACTGGATGGCACAACAGEST: gi|58672481|gb|CK061167.1|CK061167
genomic: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgc ... aatgttacagAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
EST: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG AATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAGEST: gi|29677102|gb|CB673377.1|CB673377
genomic: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgc ... aatgttacagAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
EST: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG AATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAGEST: gi|116875665|gb|EC366173.1|EC366173
genomic: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgc ... aatgttacagAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
EST: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG AATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAGEST: gi|116875549|gb|EC366057.1|EC366057
genomic: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgc ... aatgttacagAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
EST: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG AATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
genomic: TGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgc ... aatgttacagAATCTGTGGACAGTATCATGCAAGATTCACATGAACTGGATGGCACAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAGgtacgtttgcagaaatcctccatcatttattcaggcgttcattttaatttgttgttggggaagaataattttagcatagatgagtcttcatttatataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaag