1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGgtaatctctctctctctctctctctctctctctcacacacacacacacacacacacacacacattttgcttatagtctgctaattgttttctaacgggtgcag
species | Oryza sativa |
transcript | LOC_Os01g71200.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTG GTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGAEST: gi|87019678|gb|CI284364.1|CI284364
genomic: AAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGgtaatctctc ... acgggtgcagGTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGA
EST: CGGGTTCCAGCAAATGCTTTG GTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGAEST: gi|88762282|gb|CI771838.1|CI771838
genomic: CGGGTTCCAGCAAATGCTTTGgtaatctctc ... acgggtgcagGTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGA
EST: AAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTG GTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGA
genomic: AAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGgtaatctctc ... acgggtgcagGTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGgtaatctctctctctctctctctctctctctctcacacacacacacacacacacacacacacattttgcttatagtctgctaattgttttctaacgggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA